STRINGSTRING
LT85_0023 LT85_0023 LT85_0034 LT85_0034 gcvA gcvA LT85_0105 LT85_0105 LT85_0147 LT85_0147 LT85_0236 LT85_0236 LT85_0243 LT85_0243 LT85_0266 LT85_0266 LT85_0312 LT85_0312 LT85_0318 LT85_0318 LT85_0522 LT85_0522 LT85_0556 LT85_0556 LT85_0648 LT85_0648 gcvA-2 gcvA-2 LT85_0815 LT85_0815 LT85_0839 LT85_0839 LT85_1279 LT85_1279 LT85_1291 LT85_1291 LT85_1292 LT85_1292 LT85_1293 LT85_1293 LT85_1298 LT85_1298 LT85_1306 LT85_1306 LT85_1362 LT85_1362 LT85_1427 LT85_1427 gcvA-3 gcvA-3 LT85_1465 LT85_1465 LT85_1466 LT85_1466 LT85_1558 LT85_1558 LT85_1759 LT85_1759 LT85_1795 LT85_1795 LT85_1840 LT85_1840 lysR lysR LT85_2200 LT85_2200 LT85_2201 LT85_2201 LT85_2217 LT85_2217 LT85_2498 LT85_2498 LT85_2553 LT85_2553 ybhD ybhD LT85_2662 LT85_2662 LT85_2779 LT85_2779 LT85_3013 LT85_3013 metR-2 metR-2 LT85_3226 LT85_3226 LT85_3235 LT85_3235 LT85_3368 LT85_3368 LT85_3369 LT85_3369 LT85_3370 LT85_3370 LT85_3389 LT85_3389 LT85_3453 LT85_3453 yeiE yeiE LT85_3658 LT85_3658 LT85_3683 LT85_3683 LT85_3684 LT85_3684 ybhD-2 ybhD-2 LT85_3950 LT85_3950 LT85_3974 LT85_3974 LT85_4248 LT85_4248 LT85_4355 LT85_4355 LT85_4536 LT85_4536 LT85_4698 LT85_4698 gcvA-4 gcvA-4 LT85_4815 LT85_4815 LT85_4927 LT85_4927 LT85_4971 LT85_4971 LT85_4983 LT85_4983
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LT85_0023Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (313 aa)
LT85_0034Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (344 aa)
gcvAGlycine cleavage system transcriptional activator GcvA; Belongs to the LysR transcriptional regulatory family. (306 aa)
LT85_0105Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (305 aa)
LT85_0147Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family); Belongs to the LysR transcriptional regulatory family. (304 aa)
LT85_0236Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (287 aa)
LT85_0243Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (297 aa)
LT85_0266Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (308 aa)
LT85_0312Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (301 aa)
LT85_0318Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (302 aa)
LT85_0522Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (300 aa)
LT85_0556LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (292 aa)
LT85_0648Flavodoxin reductases (ferredoxin-NADPH reductases) family 1. (283 aa)
gcvA-2Glycine cleavage system transcriptional activator GcvA; Belongs to the LysR transcriptional regulatory family. (300 aa)
LT85_0815Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family. (301 aa)
LT85_0839Hydrogen peroxide-inducible genes activator; Belongs to the LysR transcriptional regulatory family. (315 aa)
LT85_1279Putative transcription regulator protein of MDR efflux pump cluster; Belongs to the LysR transcriptional regulatory family. (298 aa)
LT85_1291LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (317 aa)
LT85_1292Metallo-beta-lactamase superfamily protein. (295 aa)
LT85_1293Thioredoxin-like protein. (242 aa)
LT85_1298Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (302 aa)
LT85_1306Putative transcriptional regulator lrhA; Belongs to the LysR transcriptional regulatory family. (308 aa)
LT85_1362Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (299 aa)
LT85_1427Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (322 aa)
gcvA-3Glycine cleavage system transcriptional activator GcvA; Belongs to the LysR transcriptional regulatory family. (286 aa)
LT85_1465Transporter; LysE family. (192 aa)
LT85_1466Hypothetical protein. (64 aa)
LT85_1558Alkanesulfonate utilization operon LysR-family regulator CbI; Belongs to the LysR transcriptional regulatory family. (330 aa)
LT85_1759Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (300 aa)
LT85_1795Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (316 aa)
LT85_1840Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (319 aa)
lysRTranscriptional activator protein LysR; Belongs to the LysR transcriptional regulatory family. (298 aa)
LT85_2200Integral membrane protein. (240 aa)
LT85_2201Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (301 aa)
LT85_2217Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (302 aa)
LT85_2498LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (329 aa)
LT85_2553Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (311 aa)
ybhDLysR family transcriptional regulator YbhD; Belongs to the LysR transcriptional regulatory family. (304 aa)
LT85_2662Hypothetical protein co-occurring with RecR; Belongs to the LysR transcriptional regulatory family. (296 aa)
LT85_2779Regulatory protein; 'LysR:LysR, substrate-binding'; Belongs to the LysR transcriptional regulatory family. (288 aa)
LT85_3013Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (301 aa)
metR-2Transcriptional activator MetR; Belongs to the LysR transcriptional regulatory family. (306 aa)
LT85_3226LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family. (313 aa)
LT85_3235Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (306 aa)
LT85_3368Hypothetical protein. (146 aa)
LT85_3369LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (280 aa)
LT85_3370Hypothetical protein. (52 aa)
LT85_3389Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family. (288 aa)
LT85_3453Hypothetical protein; Belongs to the LysR transcriptional regulatory family. (313 aa)
yeiELysR family transcriptional regulator YeiE; Belongs to the LysR transcriptional regulatory family. (299 aa)
LT85_3658Transcriptional regulatory protein; Belongs to the LysR transcriptional regulatory family. (303 aa)
LT85_3683Aldo-keto reductase. (356 aa)
LT85_3684Putative transcription regulator protein of MDR efflux pump cluster; Belongs to the LysR transcriptional regulatory family. (299 aa)
ybhD-2LysR family transcriptional regulator YbhD; Belongs to the LysR transcriptional regulatory family. (307 aa)
LT85_3950LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (295 aa)
LT85_3974Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (307 aa)
LT85_4248Cyn operon transcriptional activator; Belongs to the LysR transcriptional regulatory family. (302 aa)
LT85_4355Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (274 aa)
LT85_4536Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (326 aa)
LT85_4698Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (300 aa)
gcvA-4Glycine cleavage system transcriptional activator GcvA; Belongs to the LysR transcriptional regulatory family. (318 aa)
LT85_4815Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (301 aa)
LT85_4927LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (320 aa)
LT85_4971Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (295 aa)
LT85_4983Hypothetical protein co-occurring with RecR; Belongs to the LysR transcriptional regulatory family. (321 aa)
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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