STRINGSTRING
LT85_0341 LT85_0341 LT85_0342 LT85_0342 LT85_0343 LT85_0343 LT85_1807 LT85_1807 LT85_1875 LT85_1875 LT85_2894 LT85_2894 LT85_3205 LT85_3205 LT85_3206 LT85_3206 LT85_4071 LT85_4071
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LT85_0341Siderophore biosynthesis non-ribosomal peptide synthetase modules. (2362 aa)
LT85_0342Malonyl CoA-acyl carrier protein transacylase. (3065 aa)
LT85_0343Malonyl CoA-acyl carrier protein transacylase. (2893 aa)
LT85_1807Siderophore biosynthesis non-ribosomal peptide synthetase modules. (1322 aa)
LT85_1875Siderophore biosynthesis non-ribosomal peptide synthetase modules. (6497 aa)
LT85_2894Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (421 aa)
LT85_3205Siderophore biosynthesis non-ribosomal peptide synthetase modules. (182 aa)
LT85_3206Peptide synthetase. (5651 aa)
LT85_4071Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (442 aa)
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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