STRINGSTRING
LT85_3980 LT85_3980 kduD kduD LT85_0080 LT85_0080 LT85_0084 LT85_0084 LT85_0139 LT85_0139 LT85_0184 LT85_0184 LT85_0198 LT85_0198 LT85_0208 LT85_0208 LT85_0244 LT85_0244 LT85_0250 LT85_0250 LT85_0260 LT85_0260 LT85_0288 LT85_0288 LT85_0321 LT85_0321 LT85_0323 LT85_0323 pfaA pfaA LT85_0342 LT85_0342 LT85_0346 LT85_0346 LT85_0355 LT85_0355 LT85_0358 LT85_0358 LT85_0371 LT85_0371 LT85_4988 LT85_4988 LT85_4946 LT85_4946 LT85_4874 LT85_4874 LT85_4848 LT85_4848 xdhC xdhC gpsA gpsA ahcY ahcY LT85_4564 LT85_4564 LT85_4535 LT85_4535 argC argC hemA hemA dapB dapB LT85_4358 LT85_4358 LT85_4357 LT85_4357 sucD sucD LT85_4298 LT85_4298 LT85_4290 LT85_4290 LT85_4229 LT85_4229 LT85_4181 LT85_4181 LT85_4170 LT85_4170 LT85_4151 LT85_4151 LT85_4102 LT85_4102 LT85_4100 LT85_4100 LT85_4065 LT85_4065 LT85_4058 LT85_4058 LT85_4015 LT85_4015 LT85_4010 LT85_4010 LT85_3975 LT85_3975 LT85_3941 LT85_3941 LT85_3909 LT85_3909 LT85_3893 LT85_3893 LT85_3757 LT85_3757 LT85_3751 LT85_3751 LT85_3718 LT85_3718 LT85_3694 LT85_3694 gmd gmd LT85_3673 LT85_3673 LT85_3600 LT85_3600 LT85_3596 LT85_3596 LT85_3588 LT85_3588 ilvC ilvC panG panG LT85_3463 LT85_3463 LT85_3454 LT85_3454 dxr dxr LT85_3371 LT85_3371 asd asd LT85_2719 LT85_2719 LT85_2692 LT85_2692 LT85_2691 LT85_2691 LT85_2672 LT85_2672 LT85_2633 LT85_2633 LT85_2628 LT85_2628 LT85_2565 LT85_2565 LT85_2509 LT85_2509 LT85_2440 LT85_2440 LT85_2439 LT85_2439 yncB yncB LT85_2413 LT85_2413 LT85_2218 LT85_2218 LT85_2215 LT85_2215 LT85_2198 LT85_2198 LT85_2162 LT85_2162 LT85_2153 LT85_2153 LT85_2048 LT85_2048 zwf-2 zwf-2 zwf zwf LT85_3304 LT85_3304 yncB-2 yncB-2 LT85_3190 LT85_3190 lcdH lcdH LT85_3107 LT85_3107 LT85_3029 LT85_3029 LT85_3004 LT85_3004 LT85_2981 LT85_2981 mdh mdh LT85_2875 LT85_2875 LT85_2044 LT85_2044 LT85_1983 LT85_1983 LT85_1952 LT85_1952 LT85_1870 LT85_1870 LT85_1869 LT85_1869 LT85_1843 LT85_1843 LT85_1830 LT85_1830 LT85_1813 LT85_1813 LT85_1790 LT85_1790 LT85_1752 LT85_1752 LT85_1694 LT85_1694 LT85_1598 LT85_1598 LT85_1595 LT85_1595 LT85_1571 LT85_1571 LT85_1512 LT85_1512 LT85_1495 LT85_1495 LT85_1489 LT85_1489 LT85_1478 LT85_1478 LT85_1405 LT85_1405 LT85_1373 LT85_1373 LT85_1297 LT85_1297 LT85_1295 LT85_1295 LT85_1248 LT85_1248 LT85_1199 LT85_1199 folD folD LT85_0940 LT85_0940 LT85_0921 LT85_0921 LT85_0899 LT85_0899 LT85_0895 LT85_0895 LT85_0890 LT85_0890 LT85_0887 LT85_0887 aroE aroE proC proC LT85_3350 LT85_3350 LT85_0823 LT85_0823 LT85_0755 LT85_0755 LT85_0596 LT85_0596 LT85_0591 LT85_0591 nadX nadX LT85_0536 LT85_0536 LT85_0532 LT85_0532 LT85_0530 LT85_0530 kefB kefB kefC kefC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LT85_39802-hydroxy-3-oxopropionate reductase. (295 aa)
kduDOxidoreductase; Short-chain dehydrogenase-reductase family. (261 aa)
LT85_0080Nucleoside-diphosphate-sugar epimerase. (334 aa)
LT85_0084Oxidoreductase. (219 aa)
LT85_0139Rrf2-linked NADH-flavin reductase. (203 aa)
LT85_0184Leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (343 aa)
LT85_0198Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (282 aa)
LT85_0208Oxidoreductase; Short-chain dehydrogenase-reductase family (kduD). (260 aa)
LT85_0244Oxidoreductase. (661 aa)
LT85_0250Putative oxidoreductase. (321 aa)
LT85_02603-oxoacyl-[acyl-carrier protein] reductase. (264 aa)
LT85_0288Oxidoreductase; Short-chain dehydrogenase-reductase family (kduD). (260 aa)
LT85_0321Hypothetical protein. (220 aa)
LT85_0323Oxidoreductase; Short-chain dehydrogenase-reductase family (kduD). (260 aa)
pfaAOmega-3 polyunsaturated fatty acid synthase subunit; PfaA. (2047 aa)
LT85_0342Malonyl CoA-acyl carrier protein transacylase. (3065 aa)
LT85_0346Hypothetical protein. (90 aa)
LT85_0355Alcohol dehydrogenase. (348 aa)
LT85_03583-oxoacyl-[acyl-carrier protein] reductase. (260 aa)
LT85_0371FolM Alternative dihydrofolate reductase 1. (209 aa)
LT85_4988D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (330 aa)
LT85_4946Succinyl-CoA synthetase; Alpha subunit-related enzymes. (146 aa)
LT85_4874Oxidoreductase; Short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (260 aa)
LT85_4848D-3-phosphoglycerate dehydrogenase. (313 aa)
xdhCXdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase). (366 aa)
gpsAGlycerol-3-phosphate dehydrogenase [NAD(P)+]; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (338 aa)
ahcYAdenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. (475 aa)
LT85_4564Oxidoreductase; Short-chain dehydrogenase/reductase family. (258 aa)
LT85_4535NAD-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (428 aa)
argCN-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. (345 aa)
hemAGlutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (429 aa)
dapB4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (254 aa)
LT85_4358Short-chain dehydrogenase/reductase SDR. (256 aa)
LT85_4357Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (279 aa)
sucDSuccinyl-CoA ligase [ADP-forming] alpha chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (293 aa)
LT85_4298Cyclohexadienyl dehydrogenase. (299 aa)
LT85_4290UDP-glucose dehydrogenase. (460 aa)
LT85_4229Oxidoreductase; Short-chain dehydrogenase-reductase family (kduD). (260 aa)
LT85_4181D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (310 aa)
LT85_4170Nucleoside-diphosphate-sugar epimerase. (405 aa)
LT85_4151NAD(P) transhydrogenase alpha subunit. (371 aa)
LT85_4102Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (247 aa)
LT85_4100Oxidoreductase; Short-chain dehydrogenase-reductase family (kduD). (272 aa)
LT85_4065Nucleoside-diphosphate-sugar epimerase. (269 aa)
LT85_4058Ornithine cyclodeaminase. (307 aa)
LT85_4015Nucleoside-diphosphate-sugar epimerase. (325 aa)
LT85_4010D-beta-hydroxybutyrate dehydrogenase. (301 aa)
LT85_3975Oxidoreductase; Short chain dehydrogenase/reductase family. (251 aa)
LT85_3941Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (694 aa)
LT85_3909Quinone oxidoreductase. (325 aa)
LT85_38933-hydroxypropionate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (248 aa)
LT85_3757Alcohol dehydrogenase. (355 aa)
LT85_37512-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid. (350 aa)
LT85_3718D-arabinitol 4-dehydrogenase. (466 aa)
LT85_3694UDP-glucose 4-epimerase. (313 aa)
gmdGDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (323 aa)
LT85_3673Nucleoside-diphosphate-sugar epimerase. (366 aa)
LT85_3600Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (305 aa)
LT85_3596Enoyl-CoA hydratase [isoleucine degradation]. (710 aa)
LT85_3588Oxidoreductase; Short chain dehydrogenase/reductase family. (246 aa)
ilvCKetol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. (338 aa)
panGKetopantoate reductase PanG. (262 aa)
LT85_3463Alcohol dehydrogenase. (355 aa)
LT85_3454Putative oxidoreductase in arabinose utilization cluster. (263 aa)
dxr1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. (389 aa)
LT85_3371Nucleoside-diphosphate-sugar epimerase. (346 aa)
asdAspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (377 aa)
LT85_27193-oxoacyl-[ACP] reductase. (255 aa)
LT85_2692Myo-inositol 2-dehydrogenase. (330 aa)
LT85_2691Myo-inositol 2-dehydrogenase. (316 aa)
LT85_2672Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (244 aa)
LT85_2633NAD-specific glutamate dehydrogenase. (1620 aa)
LT85_26282-dehydropantoate 2-reductase. (354 aa)
LT85_2565Quinone oxidoreductase. (326 aa)
LT85_2509Short-chain dehydrogenase/reductase SDR. (257 aa)
LT85_2440Enoyl-[acyl-carrier-protein] reductase [NADPH]. (246 aa)
LT85_2439Short-chain dehydrogenase/reductase SDR. (299 aa)
yncBPutative oxidoreductase YncB. (341 aa)
LT85_2413Saccharopine dehydrogenase-related proteins. (368 aa)
LT85_2218Bifunctional protein: zinc-containing alcohol dehydrogenase; quinone oxidoreductase (NADPH:quinone reductase). (338 aa)
LT85_2215Short chain dehydrogenase. (200 aa)
LT85_2198S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (368 aa)
LT85_2162Homoserine dehydrogenase. (436 aa)
LT85_2153UDP-glucuronic acid oxidase (UDP-4-keto-hexauronic acid decarboxylating). (351 aa)
LT85_2048L-threonine 3-dehydrogenase. (318 aa)
zwf-2Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. (490 aa)
zwfGlucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. (490 aa)
LT85_3304Enoyl-[acyl-carrier-protein] reductase [NADH]. (260 aa)
yncB-2Putative oxidoreductase YncB. (344 aa)
LT85_3190Glu/Leu/Phe/Val dehydrogenase family protein. (420 aa)
lcdHCarnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine. (319 aa)
LT85_31073-oxoacyl-[acyl-carrier protein] reductase. (249 aa)
LT85_3029Xylitol dehydrogenase. (349 aa)
LT85_30046-phosphogluconate dehydrogenase; Decarboxylating. (340 aa)
LT85_2981Alcohol dehydrogenase. (376 aa)
mdhMalate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family. (329 aa)
LT85_2875Acetoacetyl-CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (246 aa)
LT85_2044Short chain dehydrogenase. (249 aa)
LT85_1983Oxidoreductase; Short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (252 aa)
LT85_19522,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase. (260 aa)
LT85_1870Dihydroflavonol-4-reductase. (337 aa)
LT85_1869Malonyl CoA-acyl carrier protein transacylase. (5399 aa)
LT85_18433-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family. (297 aa)
LT85_1830Carbon monoxide dehydrogenase F protein. (333 aa)
LT85_18132,3-dihydro-2,3-dihydroxybenzoate dehydrogenase of siderophore biosynthesis. (258 aa)
LT85_1790FolM Alternative dihydrofolate reductase 1. (261 aa)
LT85_1752Shikimate 5-dehydrogenase I alpha. (282 aa)
LT85_16943-oxoacyl-[acyl-carrier protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. (256 aa)
LT85_15982-keto-3-deoxy-L-fuconate dehydrogenase. (258 aa)
LT85_15952-keto-3-deoxy-L-fuconate dehydrogenase. (254 aa)
LT85_15712-hydroxy-3-oxopropionate reductase. (284 aa)
LT85_1512Glyoxylate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (336 aa)
LT85_14953-hydroxyacyl-CoA dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (255 aa)
LT85_1489NADP-dependent malic enzyme. (769 aa)
LT85_1478Threonine dehydrogenase-related Zn-dependent dehydrogenase. (400 aa)
LT85_1405Oxidoreductase; Short-chain dehydrogenase-reductase family (kduD). (260 aa)
LT85_1373Nucleoside-diphosphate-sugar epimerase. (297 aa)
LT85_1297Putative nucleoside-diphosphate-sugar epimerase. (286 aa)
LT85_1295Putative dehydrogenase. (386 aa)
LT85_1248NAD-dependent glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (336 aa)
LT85_1199Quinone oxidoreductase. (328 aa)
folDMethylenetetrahydrofolate dehydrogenase (NADP+); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (257 aa)
LT85_0940NADP-dependent malic enzyme; Belongs to the malic enzymes family. (767 aa)
LT85_0921UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (340 aa)
LT85_0899Nucleoside-diphosphate sugar epimerase/dehydratase. (622 aa)
LT85_0895UDP-glucose 4-epimerase. (372 aa)
LT85_0890dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. (289 aa)
LT85_0887dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (359 aa)
aroEShikimate 5-dehydrogenase I alpha; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). (279 aa)
proCPyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. (274 aa)
LT85_3350D-beta-hydroxybutyrate dehydrogenase. (260 aa)
LT85_0823UDP-glucose 4-epimerase. (261 aa)
LT85_0755Dihydroflavonol-4-reductase. (352 aa)
LT85_0596Ornithine cyclodeaminase. (309 aa)
LT85_0591Enoyl-CoA hydratase. (795 aa)
nadXAspartate dehydrogenase-like protein; Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate. (268 aa)
LT85_05363-oxoacyl-[acyl-carrier protein] reductase. (269 aa)
LT85_05323-oxoacyl-[acyl-carrier protein] reductase. (254 aa)
LT85_0530UDP-glucose 4-epimerase. (319 aa)
kefBGlutathione-regulated potassium-efflux system protein KefB; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. (674 aa)
kefCGlutathione-regulated potassium-efflux system protein KefC; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. (614 aa)
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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