STRINGSTRING
LT85_1806 LT85_1806 acpP acpP LT85_0343 LT85_0343 LT85_0342 LT85_0342 LT85_2733 LT85_2733 LT85_3206 LT85_3206 LT85_0341 LT85_0341 pfaA pfaA LT85_0337 LT85_0337 LT85_2732 LT85_2732 LT85_2681 LT85_2681 LT85_1875 LT85_1875 LT85_1872 LT85_1872 LT85_1869 LT85_1869 LT85_1807 LT85_1807
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LT85_1806Isochorismatase of siderophore biosynthesis. (294 aa)
acpPAcyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (80 aa)
LT85_0343Malonyl CoA-acyl carrier protein transacylase. (2893 aa)
LT85_0342Malonyl CoA-acyl carrier protein transacylase. (3065 aa)
LT85_2733Acyl carrier protein (ACP1). (86 aa)
LT85_3206Peptide synthetase. (5651 aa)
LT85_0341Siderophore biosynthesis non-ribosomal peptide synthetase modules. (2362 aa)
pfaAOmega-3 polyunsaturated fatty acid synthase subunit; PfaA. (2047 aa)
LT85_0337Enoyl-[acyl-carrier-protein] reductase [FMN]. (581 aa)
LT85_2732Acyl carrier protein (ACP2). (90 aa)
LT85_2681Hypothetical protein; Belongs to the ATP-dependent AMP-binding enzyme family. (1348 aa)
LT85_1875Siderophore biosynthesis non-ribosomal peptide synthetase modules. (6497 aa)
LT85_1872Hypothetical protein. (90 aa)
LT85_1869Malonyl CoA-acyl carrier protein transacylase. (5399 aa)
LT85_1807Siderophore biosynthesis non-ribosomal peptide synthetase modules. (1322 aa)
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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