(6 nodes) RNA catabolic process network (Novosphingobium aromaticivorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

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Your Input:
	Saro_0237	DEAD/DEAH box helicase-like protein. (498 aa)
	Saro_1292	DEAD/DEAH box helicase-like protein; Belongs to the DEAD box helicase family. (464 aa)
	rne	RNAse E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. (935 aa)
	pnp	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (772 aa)
	Saro_2542	GTP-binding protein TypA. (614 aa)
	Saro_2584	DEAD/DEAH box helicase-like protein; Belongs to the DEAD box helicase family. (590 aa)

Your Current Organism:

Novosphingobium aromaticivorans

NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Saro_0237	Saro_2542	Saro_0237	Saro_2542	DEAD/DEAH box helicase-like protein.	GTP-binding protein TypA.	0.551
Saro_0237	pnp	Saro_0237	Saro_2482	DEAD/DEAH box helicase-like protein.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.704
Saro_0237	rne	Saro_0237	Saro_2318	DEAD/DEAH box helicase-like protein.	RNAse E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.	0.425
Saro_1292	Saro_2542	Saro_1292	Saro_2542	DEAD/DEAH box helicase-like protein; Belongs to the DEAD box helicase family.	GTP-binding protein TypA.	0.567
Saro_1292	pnp	Saro_1292	Saro_2482	DEAD/DEAH box helicase-like protein; Belongs to the DEAD box helicase family.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.704
Saro_1292	rne	Saro_1292	Saro_2318	DEAD/DEAH box helicase-like protein; Belongs to the DEAD box helicase family.	RNAse E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.	0.425
Saro_2542	Saro_0237	Saro_2542	Saro_0237	GTP-binding protein TypA.	DEAD/DEAH box helicase-like protein.	0.551
Saro_2542	Saro_1292	Saro_2542	Saro_1292	GTP-binding protein TypA.	DEAD/DEAH box helicase-like protein; Belongs to the DEAD box helicase family.	0.567
Saro_2542	Saro_2584	Saro_2542	Saro_2584	GTP-binding protein TypA.	DEAD/DEAH box helicase-like protein; Belongs to the DEAD box helicase family.	0.453
Saro_2542	pnp	Saro_2542	Saro_2482	GTP-binding protein TypA.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.450
Saro_2584	Saro_2542	Saro_2584	Saro_2542	DEAD/DEAH box helicase-like protein; Belongs to the DEAD box helicase family.	GTP-binding protein TypA.	0.453
Saro_2584	pnp	Saro_2584	Saro_2482	DEAD/DEAH box helicase-like protein; Belongs to the DEAD box helicase family.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.704
Saro_2584	rne	Saro_2584	Saro_2318	DEAD/DEAH box helicase-like protein; Belongs to the DEAD box helicase family.	RNAse E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.	0.425
pnp	Saro_0237	Saro_2482	Saro_0237	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	DEAD/DEAH box helicase-like protein.	0.704
pnp	Saro_1292	Saro_2482	Saro_1292	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	DEAD/DEAH box helicase-like protein; Belongs to the DEAD box helicase family.	0.704
pnp	Saro_2542	Saro_2482	Saro_2542	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	GTP-binding protein TypA.	0.450
pnp	Saro_2584	Saro_2482	Saro_2584	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	DEAD/DEAH box helicase-like protein; Belongs to the DEAD box helicase family.	0.704
pnp	rne	Saro_2482	Saro_2318	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	RNAse E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.	0.950
rne	Saro_0237	Saro_2318	Saro_0237	RNAse E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.	DEAD/DEAH box helicase-like protein.	0.425
rne	Saro_1292	Saro_2318	Saro_1292	RNAse E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.	DEAD/DEAH box helicase-like protein; Belongs to the DEAD box helicase family.	0.425

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