(57 nodes) Intracellular organelle lumen network (Novosphingobium aromaticivorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	Saro_3168	Electron transfer flavoprotein, alpha subunit. (310 aa)
	Saro_0032	Cytochrome c, class I. (160 aa)
	Saro_0067	Putative mRNA 3-end processing factor. (357 aa)
	Saro_0121	Helicase-like protein. (855 aa)
	Saro_0127	acyl-CoA dehydrogenase-like protein. (572 aa)
	Saro_0174	succinyl-CoA:(R)-citramalate CoA-transferase; Belongs to the CoA-transferase III family. (400 aa)
	Saro_0282	acyl-CoA dehydrogenase-like protein. (433 aa)
	Saro_0414	Glutathione-dependent formaldehyde-activating, GFA. (132 aa)
	Saro_0457	Electron transfer flavoprotein, alpha subunit. (310 aa)
	Saro_0468	Cytochrome c, class I. (296 aa)
	Saro_0474	Sulfatase. (491 aa)
	Saro_0536	Protein of unknown function DUF323. (315 aa)
	Saro_0559	5'-nucleotidase; Belongs to the 5'-nucleotidase family. (583 aa)
	Saro_0739	Outer membrane transport energization protein TonB; TC 2.C.1.1.1. (247 aa)
	Saro_0815	Biotin carboxyl carrier protein / biotin carboxylase. (673 aa)
	Saro_0817	Cytochrome c, class I. (149 aa)
	nusG	Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. (178 aa)
	Saro_0996	acyl-CoA dehydrogenase-like protein. (430 aa)
	Saro_0999	acyl-CoA dehydrogenase-like protein. (386 aa)
	Saro_1000	acyl-CoA dehydrogenase-like protein. (379 aa)
	Saro_1021	Polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (400 aa)
	Saro_1172	Uracil-DNA glycosylase superfamily. (168 aa)
	Saro_1290	FAD linked oxidase-like protein. (472 aa)
	Saro_1382	2OG-Fe(II) oxygenase. (211 aa)
	Saro_1568	acyl-CoA dehydrogenase-like protein. (395 aa)
	Saro_1569	acyl-CoA dehydrogenase-like protein. (369 aa)
	Saro_1602	Beta-lactamase-like protein. (535 aa)
	Saro_1642	Carbamoyl-phosphate synthase L chain, ATP-binding protein. (623 aa)
	Saro_1643	Propionyl-CoA carboxylase. (537 aa)
	Saro_1705	acyl-CoA dehydrogenase-like protein. (393 aa)
	Saro_1723	Cytochrome c, class I. (124 aa)
	Saro_1825	Glutathione-dependent formaldehyde-activating, GFA. (135 aa)
	Saro_1850	Aminomethyltransferase. (388 aa)
	Saro_1860	Carbamoyl-phosphate synthase L chain, ATP-binding protein. (444 aa)
	Saro_1975	Branched-chain alpha-keto acid dehydrogenase E1 component. (351 aa)
	Saro_2045	L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family. (355 aa)
	Saro_2079	acetyl-CoA carboxylase carboxyltransferase subunit alpha; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (448 aa)
	Saro_2089	Hypothetical protein. (259 aa)
	Saro_2092	Glutathione-dependent formaldehyde-activating, GFA. (147 aa)
	Saro_2105	acyl-CoA dehydrogenase-like protein. (600 aa)
	Saro_2348	Peptidase M20D, amidohydrolase. (399 aa)
	Saro_2355	2OG-Fe(II) oxygenase. (257 aa)
	Saro_2456	L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family. (408 aa)
	Saro_2474	Protein of unknown function DUF323. (310 aa)
	nusA	NusA antitermination factor; Participates in both transcription termination and antitermination. (544 aa)
	Saro_2501	L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family. (390 aa)
	Saro_2511	acyl-CoA dehydrogenase-like protein. (408 aa)
	Saro_2594	Conserved hypothetical protein. (350 aa)
	Saro_2622	propionyl-CoA synthetase. (642 aa)
	acsA	Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. (649 aa)
	Saro_2797	Aminotransferase, class V. (360 aa)
	Saro_2798	Aminotransferase, class V. (348 aa)
	Saro_2841	ATP12 ATPase. (230 aa)
	Saro_2922	Carboxylesterase; Serine hydrolase involved in the detoxification of formaldehyde. (285 aa)
	Saro_2932	Peptidase M20D, amidohydrolase. (382 aa)
	Saro_3272	HAD-superfamily hydrolase subfamily IA, variant 3. (207 aa)
	Saro_3311	Hypothetical protein. (83 aa)

Your Current Organism:

Novosphingobium aromaticivorans

NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Saro_0121	Saro_2841	Saro_0121	Saro_2841	Helicase-like protein.	ATP12 ATPase.	0.467
Saro_0127	Saro_0457	Saro_0127	Saro_0457	acyl-CoA dehydrogenase-like protein.	Electron transfer flavoprotein, alpha subunit.	0.670
Saro_0127	Saro_3168	Saro_0127	Saro_3168	acyl-CoA dehydrogenase-like protein.	Electron transfer flavoprotein, alpha subunit.	0.670
Saro_0282	Saro_0457	Saro_0282	Saro_0457	acyl-CoA dehydrogenase-like protein.	Electron transfer flavoprotein, alpha subunit.	0.468
Saro_0282	Saro_1642	Saro_0282	Saro_1642	acyl-CoA dehydrogenase-like protein.	Carbamoyl-phosphate synthase L chain, ATP-binding protein.	0.913
Saro_0282	Saro_1643	Saro_0282	Saro_1643	acyl-CoA dehydrogenase-like protein.	Propionyl-CoA carboxylase.	0.922
Saro_0282	Saro_3168	Saro_0282	Saro_3168	acyl-CoA dehydrogenase-like protein.	Electron transfer flavoprotein, alpha subunit.	0.468
Saro_0414	Saro_2092	Saro_0414	Saro_2092	Glutathione-dependent formaldehyde-activating, GFA.	Glutathione-dependent formaldehyde-activating, GFA.	0.774
Saro_0457	Saro_0127	Saro_0457	Saro_0127	Electron transfer flavoprotein, alpha subunit.	acyl-CoA dehydrogenase-like protein.	0.670
Saro_0457	Saro_0282	Saro_0457	Saro_0282	Electron transfer flavoprotein, alpha subunit.	acyl-CoA dehydrogenase-like protein.	0.468
Saro_0457	Saro_0996	Saro_0457	Saro_0996	Electron transfer flavoprotein, alpha subunit.	acyl-CoA dehydrogenase-like protein.	0.468
Saro_0457	Saro_0999	Saro_0457	Saro_0999	Electron transfer flavoprotein, alpha subunit.	acyl-CoA dehydrogenase-like protein.	0.468
Saro_0457	Saro_1000	Saro_0457	Saro_1000	Electron transfer flavoprotein, alpha subunit.	acyl-CoA dehydrogenase-like protein.	0.532
Saro_0457	Saro_1568	Saro_0457	Saro_1568	Electron transfer flavoprotein, alpha subunit.	acyl-CoA dehydrogenase-like protein.	0.468
Saro_0457	Saro_1569	Saro_0457	Saro_1569	Electron transfer flavoprotein, alpha subunit.	acyl-CoA dehydrogenase-like protein.	0.572
Saro_0457	Saro_1705	Saro_0457	Saro_1705	Electron transfer flavoprotein, alpha subunit.	acyl-CoA dehydrogenase-like protein.	0.542
Saro_0457	Saro_2105	Saro_0457	Saro_2105	Electron transfer flavoprotein, alpha subunit.	acyl-CoA dehydrogenase-like protein.	0.636
Saro_0457	Saro_2511	Saro_0457	Saro_2511	Electron transfer flavoprotein, alpha subunit.	acyl-CoA dehydrogenase-like protein.	0.468
Saro_0474	Saro_0536	Saro_0474	Saro_0536	Sulfatase.	Protein of unknown function DUF323.	0.763
Saro_0474	Saro_2474	Saro_0474	Saro_2474	Sulfatase.	Protein of unknown function DUF323.	0.767

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