(22 nodes) Flavin adenine dinucleotide binding network (Corynebacterium flavescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APT86673.1	Acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology. (607 aa)
	APT86643.1	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
	APT86303.1	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (974 aa)
	lpdA	Dihydrolipoyl dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)
	murB	UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. (364 aa)
	APT86077.1	FAD-linked oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)
	APT86238.1	Flavoprotein disulfide reductase; Catalyzes the reduction of nonspecific electron acceptors such as 2,6-dimethyl-1,4-benzoquinone and 5-hydroxy-1,4-naphthaquinone; does not have lipoamide dehydrogenase activity; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
	APT86279.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	thiO	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
	APT85856.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (933 aa)
	betA	Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. (587 aa)
	APT85903.1	decaprenylphosphoryl-beta-D-ribose oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)
	APT87917.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (513 aa)
	APT87924.1	Phenol 2-monooxygenase; Catalyzes the formation of catechol from phenol; Derived by automated computational analysis using gene prediction method: Protein Homology. (615 aa)
	lpdA-2	E3 component of alpha keto acid dehydrogenase complexes LpdC; forms a homodimer; binds one molecule of FAD monomer; catalyzes NAD+-dependent oxidation of dihydrolipoyl cofactors that are covalently linked to the E2 component; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)
	dusB	nifR3 family TIM-barrel protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (381 aa)
	APT87310.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)
	APT87309.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (486 aa)
	mtr	Catalyzes the reduction of mycothione or glutathione to mycothione or glutathione disulfide; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
	thyX	Thymidylate synthase ThyX; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. (248 aa)
	APT86864.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	APT86825.1	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (973 aa)

Your Current Organism:

Corynebacterium flavescens

NCBI taxonomy Id: 28028
Other names: ATCC 10340, C. flavescens, CCUG 28791, CIP 69.5, DSM 20296, IFO 14136, LMG 4046, LMG:4046, Microbacterium flavum , Mycobacterium flavum, NBRC 14136, NCCB 42012, NCIB 8707, NCIB:8707, NCIMB 8707

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APT85856.1	APT86303.1	CFLV_00640	CFLV_03255	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
APT85856.1	APT86643.1	CFLV_00640	CFLV_05225	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
APT85856.1	APT86825.1	CFLV_00640	CFLV_06245	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
APT85903.1	APT86643.1	CFLV_00900	CFLV_05225	decaprenylphosphoryl-beta-D-ribose oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
APT86077.1	APT86643.1	CFLV_01950	CFLV_05225	FAD-linked oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.634
APT86279.1	APT86643.1	CFLV_03110	CFLV_05225	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
APT86279.1	lpdA	CFLV_03110	CFLV_01625	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrolipoyl dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
APT86279.1	lpdA-2	CFLV_03110	CFLV_10900	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	E3 component of alpha keto acid dehydrogenase complexes LpdC; forms a homodimer; binds one molecule of FAD monomer; catalyzes NAD+-dependent oxidation of dihydrolipoyl cofactors that are covalently linked to the E2 component; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
APT86303.1	APT85856.1	CFLV_03255	CFLV_00640	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
APT86303.1	APT86643.1	CFLV_03255	CFLV_05225	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
APT86303.1	APT86825.1	CFLV_03255	CFLV_06245	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.510
APT86643.1	APT85856.1	CFLV_05225	CFLV_00640	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
APT86643.1	APT85903.1	CFLV_05225	CFLV_00900	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	decaprenylphosphoryl-beta-D-ribose oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
APT86643.1	APT86077.1	CFLV_05225	CFLV_01950	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-linked oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.634
APT86643.1	APT86279.1	CFLV_05225	CFLV_03110	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
APT86643.1	APT86303.1	CFLV_05225	CFLV_03255	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
APT86643.1	APT86825.1	CFLV_05225	CFLV_06245	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
APT86825.1	APT85856.1	CFLV_06245	CFLV_00640	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
APT86825.1	APT86303.1	CFLV_06245	CFLV_03255	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.510
APT86825.1	APT86643.1	CFLV_06245	CFLV_05225	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621

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