(13 nodes) Mixed, incl. NlpA lipoprotein, and NIL domain network (Staphylococcus lugdunensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARJ28752.1	Cell wall protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)
	ARJ28753.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
	ARJ28754.1	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family. (271 aa)
	ARJ30302.1	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family. (270 aa)
	ARJ30303.1	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	metN	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (341 aa)
	ARJ30305.1	Thiol reductase thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (99 aa)
	ARJ30306.1	Topiosmerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)
	ARJ30308.1	Arsenate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family. (118 aa)
	ARJ30309.1	Thiol reductase thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (107 aa)
	ARJ30699.1	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family. (279 aa)
	ARJ30700.1	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	metN-2	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (340 aa)

Your Current Organism:

Staphylococcus lugdunensis

NCBI taxonomy Id: 28035
Other names: ATCC 43809, CCUG 25348, CIP 103642, DSM 4804, LMG 13346, LMG:13346, NCTC 12217, NRRL B-14774, S. lugdunensis, strain N860297

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARJ28752.1	ARJ28753.1	B6N84_01715	B6N84_01720	Cell wall protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
ARJ28753.1	ARJ28752.1	B6N84_01720	B6N84_01715	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell wall protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
ARJ28754.1	ARJ30302.1	B6N84_01725	B6N84_09930	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.	0.902
ARJ28754.1	ARJ30303.1	B6N84_01725	B6N84_09935	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
ARJ28754.1	ARJ30699.1	B6N84_01725	B6N84_12075	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.	0.920
ARJ28754.1	ARJ30700.1	B6N84_01725	B6N84_12080	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
ARJ28754.1	metN	B6N84_01725	B6N84_09940	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.989
ARJ28754.1	metN-2	B6N84_01725	B6N84_12085	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.988
ARJ30302.1	ARJ28754.1	B6N84_09930	B6N84_01725	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.	0.902
ARJ30302.1	ARJ30303.1	B6N84_09930	B6N84_09935	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ARJ30302.1	ARJ30305.1	B6N84_09930	B6N84_09945	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.	Thiol reductase thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.512
ARJ30302.1	ARJ30306.1	B6N84_09930	B6N84_09950	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.	Topiosmerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
ARJ30302.1	ARJ30699.1	B6N84_09930	B6N84_12075	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.	0.919
ARJ30302.1	ARJ30700.1	B6N84_09930	B6N84_12080	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
ARJ30302.1	metN	B6N84_09930	B6N84_09940	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.998
ARJ30302.1	metN-2	B6N84_09930	B6N84_12085	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.988
ARJ30303.1	ARJ28754.1	B6N84_09935	B6N84_01725	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.	0.990
ARJ30303.1	ARJ30302.1	B6N84_09935	B6N84_09930	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family.	0.997
ARJ30303.1	ARJ30305.1	B6N84_09935	B6N84_09945	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiol reductase thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745
ARJ30303.1	ARJ30306.1	B6N84_09935	B6N84_09950	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Topiosmerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745

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