(35 nodes) Mostly uncharacterized, incl. Cytochrome complex assembly, and Photosynthesis, light reaction network (Cyanidioschyzon merolae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CYME_CMJ276C	ClpS domain-containing protein. (198 aa)
	CYME_CMK092C	Uncharacterized protein. (207 aa)
	CYME_CMK184C	bPH_2 domain-containing protein. (196 aa)
	CYME_CMK268C	Uncharacterized protein. (660 aa)
	CYME_CMK307C	Probable thylakoid lumen rotamase. (460 aa)
	CYME_CMM016C	Uncharacterized protein. (714 aa)
	CYME_CMP106C	Uncharacterized protein. (254 aa)
	CYME_CMP233C	TPM_phosphatase domain-containing protein. (224 aa)
	CYME_CMS050C	Uncharacterized protein. (333 aa)
	CYME_CMS285C	Uncharacterized protein. (309 aa)
	CYME_CMT392C	Uncharacterized protein. (280 aa)
	CYME_CMJ095C	Uncharacterized protein. (408 aa)
	CYME_CMJ208C	Uncharacterized protein. (222 aa)
	CYME_CML309C	Uncharacterized protein. (244 aa)
	CYME_CMO077C	DUF1995 domain-containing protein. (318 aa)
	CYME_CMQ319C	Uncharacterized protein. (214 aa)
	CYME_CMD122C	Polyketide_cyc domain-containing protein. (244 aa)
	CYME_CMR394C	Uncharacterized protein. (387 aa)
	CYME_CMF039C	Uncharacterized protein. (314 aa)
	CYME_CMT057C	Uncharacterized protein. (204 aa)
	CYME_CMM306C	Uncharacterized protein. (299 aa)
	CYME_CMP032C	AB hydrolase-1 domain-containing protein. (257 aa)
	CYME_CMP332C	Similar to fibrillin. (229 aa)
	CYME_CMQ364C	NnrU domain-containing protein. (434 aa)
	CYME_CME041C	Photosystem II biogenesis protein Psb29. (327 aa)
	CYME_CMS090C	PAP_fibrillin domain-containing protein. (301 aa)
	CYME_CMI172C	Uncharacterized protein. (322 aa)
	CYME_CMC183C	AB hydrolase-1 domain-containing protein. (542 aa)
	CYME_CMO209C	VKc domain-containing protein. (461 aa)
	CYME_CMD157C	Polyketide_cyc domain-containing protein. (325 aa)
	CYME_CMP058C	Similar to ferredoxin-thioredoxin reductase, variable chain. (138 aa)
	CYME_CMQ153C	Uncharacterized protein. (522 aa)
	CYME_CMH188C	Uncharacterized protein. (411 aa)
	CYME_CMS436C	Uncharacterized protein. (405 aa)
	CYME_CMT137C	Uncharacterized protein. (242 aa)

Your Current Organism:

Cyanidioschyzon merolae

NCBI taxonomy Id: 280699
Other names: C. merolae strain 10D, Cyanidioschyzon merolae strain 10D

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYME_CMC183C	CYME_CMK307C	M1VEZ7	M1USH1	AB hydrolase-1 domain-containing protein.	Probable thylakoid lumen rotamase.	0.462
CYME_CMC183C	CYME_CMP233C	M1VEZ7	M1UVA4	AB hydrolase-1 domain-containing protein.	TPM_phosphatase domain-containing protein.	0.415
CYME_CMC183C	CYME_CMS436C	M1VEZ7	M1VM58	AB hydrolase-1 domain-containing protein.	Uncharacterized protein.	0.410
CYME_CMD122C	CYME_CMJ208C	M1V6T4	M1V5A4	Polyketide_cyc domain-containing protein.	Uncharacterized protein.	0.470
CYME_CMD122C	CYME_CMP058C	M1V6T4	M1VFH7	Polyketide_cyc domain-containing protein.	Similar to ferredoxin-thioredoxin reductase, variable chain.	0.444
CYME_CMD122C	CYME_CMP106C	M1V6T4	M1UV18	Polyketide_cyc domain-containing protein.	Uncharacterized protein.	0.400
CYME_CMD122C	CYME_CMR394C	M1V6T4	M1V6W8	Polyketide_cyc domain-containing protein.	Uncharacterized protein.	0.440
CYME_CME041C	CYME_CMJ276C	M1VAS6	M1URX7	Photosystem II biogenesis protein Psb29.	ClpS domain-containing protein.	0.434
CYME_CME041C	CYME_CMO209C	M1VAS6	M1VF30	Photosystem II biogenesis protein Psb29.	VKc domain-containing protein.	0.455
CYME_CME041C	CYME_CMP032C	M1VAS6	M1V9R4	Photosystem II biogenesis protein Psb29.	AB hydrolase-1 domain-containing protein.	0.428
CYME_CME041C	CYME_CMP106C	M1VAS6	M1UV18	Photosystem II biogenesis protein Psb29.	Uncharacterized protein.	0.427
CYME_CME041C	CYME_CMP233C	M1VAS6	M1UVA4	Photosystem II biogenesis protein Psb29.	TPM_phosphatase domain-containing protein.	0.521
CYME_CME041C	CYME_CMQ319C	M1VAS6	M1V6H2	Photosystem II biogenesis protein Psb29.	Uncharacterized protein.	0.408
CYME_CME041C	CYME_CMQ364C	M1VAS6	M1VAP9	Photosystem II biogenesis protein Psb29.	NnrU domain-containing protein.	0.444
CYME_CME041C	CYME_CMS050C	M1VAS6	M1UWP3	Photosystem II biogenesis protein Psb29.	Uncharacterized protein.	0.449
CYME_CMF039C	CYME_CMI172C	M1V730	M1VC51	Uncharacterized protein.	Uncharacterized protein.	0.416
CYME_CMF039C	CYME_CMK092C	M1V730	M1US51	Uncharacterized protein.	Uncharacterized protein.	0.514
CYME_CMF039C	CYME_CMP058C	M1V730	M1VFH7	Uncharacterized protein.	Similar to ferredoxin-thioredoxin reductase, variable chain.	0.457
CYME_CMF039C	CYME_CMS050C	M1V730	M1UWP3	Uncharacterized protein.	Uncharacterized protein.	0.403
CYME_CMF039C	CYME_CMS436C	M1V730	M1VM58	Uncharacterized protein.	Uncharacterized protein.	0.455