(19 nodes) Preribosome, large subunit precursor, and Brix domain network (Cyanidioschyzon merolae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CYME_CMD030C	Uncharacterized protein. (257 aa)
	CYME_CME151C	GTP-binding protein of Nug1 family. (434 aa)
	CYME_CMP349C	Similar to RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (626 aa)
	CYME_CMS476C	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (260 aa)
	CYME_CMJ252C	Probable rRNA methyltransferase pmt2. (848 aa)
	CYME_CML272C	Brix domain-containing protein. (297 aa)
	CYME_CMP117C	Block of proliferation 1. (684 aa)
	CYME_CMS390C	Probable essential nucleolar protein required for biogenesis of the 60S ribosomal subunit Brx1p. (301 aa)
	CYME_CMT105C	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (653 aa)
	CYME_CMI122C	Similar to RNA-binding protein with RRM. (168 aa)
	CYME_CMN108C	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (184 aa)
	CYME_CMO236C	Uncharacterized protein. (340 aa)
	CYME_CMT080C	Uncharacterized protein. (344 aa)
	CYME_CMT341C	Protein MAK16 homolog; Belongs to the MAK16 family. (348 aa)
	CYME_CMQ057C	Brix domain-containing protein. (331 aa)
	CYME_CMS416C	RNA helicase. (715 aa)
	CYME_CML268C	PUM-HD domain-containing protein. (552 aa)
	CYME_CMO200C	Similar to nucleolar ribosome transport complex component Noc2p. (757 aa)
	CYME_CMR049C	Similar to nucleolar complex Nop3. (871 aa)

Your Current Organism:

Cyanidioschyzon merolae

NCBI taxonomy Id: 280699
Other names: C. merolae strain 10D, Cyanidioschyzon merolae strain 10D

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYME_CMD030C	CYME_CME151C	M1UNX0	M1UPL1	Uncharacterized protein.	GTP-binding protein of Nug1 family.	0.966
CYME_CMD030C	CYME_CMI122C	M1UNX0	M1V7R1	Uncharacterized protein.	Similar to RNA-binding protein with RRM.	0.996
CYME_CMD030C	CYME_CMJ252C	M1UNX0	M1V5B1	Uncharacterized protein.	Probable rRNA methyltransferase pmt2.	0.980
CYME_CMD030C	CYME_CML268C	M1UNX0	M1VIE6	Uncharacterized protein.	PUM-HD domain-containing protein.	0.939
CYME_CMD030C	CYME_CML272C	M1UNX0	M1V5L0	Uncharacterized protein.	Brix domain-containing protein.	0.980
CYME_CMD030C	CYME_CMN108C	M1UNX0	M1V959	Uncharacterized protein.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.971
CYME_CMD030C	CYME_CMO200C	M1UNX0	M1VJM8	Uncharacterized protein.	Similar to nucleolar ribosome transport complex component Noc2p.	0.987
CYME_CMD030C	CYME_CMO236C	M1UNX0	M1V9K6	Uncharacterized protein.	Uncharacterized protein.	0.970
CYME_CMD030C	CYME_CMP117C	M1UNX0	M1V641	Uncharacterized protein.	Block of proliferation 1.	0.995
CYME_CMD030C	CYME_CMP349C	M1UNX0	M1UVE4	Uncharacterized protein.	Similar to RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.942
CYME_CMD030C	CYME_CMQ057C	M1UNX0	M1VG07	Uncharacterized protein.	Brix domain-containing protein.	0.977
CYME_CMD030C	CYME_CMR049C	M1UNX0	M1VL21	Uncharacterized protein.	Similar to nucleolar complex Nop3.	0.951
CYME_CMD030C	CYME_CMS390C	M1UNX0	M1V7C5	Uncharacterized protein.	Probable essential nucleolar protein required for biogenesis of the 60S ribosomal subunit Brx1p.	0.998
CYME_CMD030C	CYME_CMS416C	M1UNX0	M1VHS8	Uncharacterized protein.	RNA helicase.	0.915
CYME_CMD030C	CYME_CMS476C	M1UNX0	M1UX80	Uncharacterized protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.954
CYME_CMD030C	CYME_CMT080C	M1UNX0	M1VCA3	Uncharacterized protein.	Uncharacterized protein.	0.967
CYME_CMD030C	CYME_CMT105C	M1UNX0	M1V7I0	Uncharacterized protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.999
CYME_CMD030C	CYME_CMT341C	M1UNX0	M1VCQ6	Uncharacterized protein.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.968
CYME_CME151C	CYME_CMD030C	M1UPL1	M1UNX0	GTP-binding protein of Nug1 family.	Uncharacterized protein.	0.966
CYME_CME151C	CYME_CMI122C	M1UPL1	M1V7R1	GTP-binding protein of Nug1 family.	Similar to RNA-binding protein with RRM.	0.949