(43 nodes) Preribosome network (Cyanidioschyzon merolae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CYME_CMJ252C	Probable rRNA methyltransferase pmt2. (848 aa)
	CYME_CMD030C	Uncharacterized protein. (257 aa)
	CYME_CMG105C	Probable WD-repeat membrane protein. (970 aa)
	CYME_CMI018C	Similar to U3 snoRNP component Utp14p. (1007 aa)
	CYME_CMS476C	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (260 aa)
	CYME_CMS485C	Nop domain-containing protein. (364 aa)
	CYME_CMB019C	Similar to U3 snoRNP component Mpp10. (953 aa)
	CYME_CMG184C	Similar to U3 snoRNP component Utp6p. (317 aa)
	CYME_CMT605C	Box C/D snoRNP component Nop58. (515 aa)
	CYME_CMQ071C	Probable U3 snoRNP component Imp4p. (344 aa)
	CYME_CMP003C	NUC153 domain-containing protein. (513 aa)
	CYME_CMO200C	Similar to nucleolar ribosome transport complex component Noc2p. (757 aa)
	CYME_CMO023C	Similar to rRNA biogenesis protein rrp5 homolog multiple S1 rna binding domain protein. (2038 aa)
	CYME_CMJ206C	Uncharacterized protein. (592 aa)
	CYME_CMR267C	Similar to U3 snoRNP-associated 55-kDa protein RRP9. (601 aa)
	CYME_CMI132C	U3 snoRNP component Sof1p. (442 aa)
	CYME_CMP203C	CBF domain-containing protein. (624 aa)
	CYME_CMB048C	60S acidic ribosomal protein PO. (235 aa)
	CYME_CMN074C	Box C/D snoRNP rRNA methylase component fibrillarin. (356 aa)
	CYME_CML046C	PINc domain-containing protein. (196 aa)
	CYME_CMT341C	Protein MAK16 homolog; Belongs to the MAK16 family. (348 aa)
	CYME_CMJ120C	Putative nin one binding protein. (509 aa)
	CYME_CMT080C	Uncharacterized protein. (344 aa)
	CYME_CMR371C	Similar to rRNA processing protein 7. (450 aa)
	CYME_CMC063C	Probable ribosome biogenesis protein NEP1. (234 aa)
	CYME_CMA015C	Uncharacterized protein. (915 aa)
	CYME_CMO236C	Uncharacterized protein. (340 aa)
	CYME_CMO109C	Pre-rRNA processing protein bystin. (490 aa)
	CYME_CMN167C	RIO-like serine/threonine protein kinase. (509 aa)
	CYME_CMN108C	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (184 aa)
	CYME_CMT432C	Similar to charged amino acid rich leucine zipper factor-1. (796 aa)
	CYME_CMT211C	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (241 aa)
	CYME_CMT105C	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (653 aa)
	CYME_CMF157C	Probable U3 snoRNP component Utp7p. (645 aa)
	CYME_CMS060C	Bms1-type G domain-containing protein. (1205 aa)
	CYME_CME044C	Uncharacterized protein. (1115 aa)
	CYME_CMC134C	Probable constituent of 66S pre-ribosomal particles Nsa2p. (264 aa)
	CYME_CMC010C	Similar to U3 snoRNP component Imp3p. (174 aa)
	CYME_CMA122C	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (200 aa)
	CYME_CMQ185C	Box C/D snoRNP component Nop56. (554 aa)
	CYME_CMP117C	Block of proliferation 1. (684 aa)
	CYME_CMP042C	Similar to U3 snoRNP component Utp13p. (1216 aa)
	CYME_CML272C	Brix domain-containing protein. (297 aa)

Your Current Organism:

Cyanidioschyzon merolae

NCBI taxonomy Id: 280699
Other names: C. merolae strain 10D, Cyanidioschyzon merolae strain 10D

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYME_CMA015C	CYME_CMA122C	M1V9S9	M1V6D3	Uncharacterized protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.974
CYME_CMA015C	CYME_CMB019C	M1V9S9	M1V3P7	Uncharacterized protein.	Similar to U3 snoRNP component Mpp10.	0.750
CYME_CMA015C	CYME_CMB048C	M1V9S9	M1VEF5	Uncharacterized protein.	60S acidic ribosomal protein PO.	0.871
CYME_CMA015C	CYME_CMC010C	M1V9S9	M1V6I3	Uncharacterized protein.	Similar to U3 snoRNP component Imp3p.	0.831
CYME_CMA015C	CYME_CMC134C	M1V9S9	M1V6M0	Uncharacterized protein.	Probable constituent of 66S pre-ribosomal particles Nsa2p.	0.695
CYME_CMA015C	CYME_CMD030C	M1V9S9	M1UNX0	Uncharacterized protein.	Uncharacterized protein.	0.740
CYME_CMA015C	CYME_CME044C	M1V9S9	M1V6X4	Uncharacterized protein.	Uncharacterized protein.	0.839
CYME_CMA015C	CYME_CMF157C	M1V9S9	M1V760	Uncharacterized protein.	Probable U3 snoRNP component Utp7p.	0.820
CYME_CMA015C	CYME_CMG105C	M1V9S9	M1UQ39	Uncharacterized protein.	Probable WD-repeat membrane protein.	0.843
CYME_CMA015C	CYME_CMG184C	M1V9S9	M1V4U7	Uncharacterized protein.	Similar to U3 snoRNP component Utp6p.	0.804
CYME_CMA015C	CYME_CMI018C	M1V9S9	M1UQW0	Uncharacterized protein.	Similar to U3 snoRNP component Utp14p.	0.841
CYME_CMA015C	CYME_CMI132C	M1V9S9	M1VGX4	Uncharacterized protein.	U3 snoRNP component Sof1p.	0.468
CYME_CMA015C	CYME_CMJ120C	M1V9S9	M1VCG4	Uncharacterized protein.	Putative nin one binding protein.	0.999
CYME_CMA015C	CYME_CMJ206C	M1V9S9	M1VHH4	Uncharacterized protein.	Uncharacterized protein.	0.737
CYME_CMA015C	CYME_CMJ252C	M1V9S9	M1V5B1	Uncharacterized protein.	Probable rRNA methyltransferase pmt2.	0.841
CYME_CMA015C	CYME_CML046C	M1V9S9	M1VD74	Uncharacterized protein.	PINc domain-containing protein.	0.586
CYME_CMA015C	CYME_CML272C	M1V9S9	M1V5L0	Uncharacterized protein.	Brix domain-containing protein.	0.683
CYME_CMA015C	CYME_CMN074C	M1V9S9	M1VE87	Uncharacterized protein.	Box C/D snoRNP rRNA methylase component fibrillarin.	0.505
CYME_CMA015C	CYME_CMN108C	M1V9S9	M1V959	Uncharacterized protein.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.781
CYME_CMA015C	CYME_CMN167C	M1V9S9	M1V982	Uncharacterized protein.	RIO-like serine/threonine protein kinase.	0.996