13 items (Cyanidioschyzon merolae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CYME_CMG157C	60S ribosomal protein L26. (143 aa)
	CYME_CMH065C	60S ribosomal protein L14. (140 aa)
	CYME_CMH218C	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (257 aa)
	CYME_CMS351C	Eukaryotic translation initiation factor 5A. (160 aa)
	CYME_CMR024C	Transcription antiterminator protein, probably for organellar transcription. (436 aa)
	CYME_CMI055C	Mitochondrial ribosomal protein L24. (244 aa)
	CYME_CMK187C	Chloroplast translation elongation factor P. (262 aa)
	CYME_CMP277C	Mitochondrial ribosomal protein L2. (471 aa)
	CYME_CMQ078C	60S ribosomal protein L6. (231 aa)
	CYME_CMR287C	60S ribosomal protein L8. (256 aa)
	CYME_CMD151C	Similar to transcription initiation protein SPT5. (1733 aa)
	rpl24	50S ribosomal protein L24, chloroplastic; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (75 aa)
	rpl2	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family. (245 aa)

Your Current Organism:

Cyanidioschyzon merolae

NCBI taxonomy Id: 280699
Other names: C. merolae strain 10D, Cyanidioschyzon merolae strain 10D

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYME_CMG157C	CYME_CMH065C	M1UQ70	M1UQG7	60S ribosomal protein L26.	60S ribosomal protein L14.	0.999
CYME_CMG157C	CYME_CMH218C	M1UQ70	M1UQS0	60S ribosomal protein L26.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.998
CYME_CMG157C	CYME_CMK187C	M1UQ70	M1V8E0	60S ribosomal protein L26.	Chloroplast translation elongation factor P.	0.671
CYME_CMG157C	CYME_CMP277C	M1UQ70	M1VA26	60S ribosomal protein L26.	Mitochondrial ribosomal protein L2.	0.732
CYME_CMG157C	CYME_CMQ078C	M1UQ70	M1VAA0	60S ribosomal protein L26.	60S ribosomal protein L6.	0.999
CYME_CMG157C	CYME_CMR287C	M1UQ70	M1VB78	60S ribosomal protein L26.	60S ribosomal protein L8.	0.999
CYME_CMG157C	CYME_CMS351C	M1UQ70	M1UX34	60S ribosomal protein L26.	Eukaryotic translation initiation factor 5A.	0.942
CYME_CMG157C	rpl2	M1UQ70	Q85FW0	60S ribosomal protein L26.	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.	0.732
CYME_CMH065C	CYME_CMG157C	M1UQG7	M1UQ70	60S ribosomal protein L14.	60S ribosomal protein L26.	0.999
CYME_CMH065C	CYME_CMH218C	M1UQG7	M1UQS0	60S ribosomal protein L14.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999
CYME_CMH065C	CYME_CMI055C	M1UQG7	M1V7P3	60S ribosomal protein L14.	Mitochondrial ribosomal protein L24.	0.786
CYME_CMH065C	CYME_CMK187C	M1UQG7	M1V8E0	60S ribosomal protein L14.	Chloroplast translation elongation factor P.	0.615
CYME_CMH065C	CYME_CMP277C	M1UQG7	M1VA26	60S ribosomal protein L14.	Mitochondrial ribosomal protein L2.	0.723
CYME_CMH065C	CYME_CMQ078C	M1UQG7	M1VAA0	60S ribosomal protein L14.	60S ribosomal protein L6.	0.999
CYME_CMH065C	CYME_CMR287C	M1UQG7	M1VB78	60S ribosomal protein L14.	60S ribosomal protein L8.	0.999
CYME_CMH065C	CYME_CMS351C	M1UQG7	M1UX34	60S ribosomal protein L14.	Eukaryotic translation initiation factor 5A.	0.977
CYME_CMH065C	rpl2	M1UQG7	Q85FW0	60S ribosomal protein L14.	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.	0.723
CYME_CMH065C	rpl24	M1UQG7	Q85FV2	60S ribosomal protein L14.	50S ribosomal protein L24, chloroplastic; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.786
CYME_CMH218C	CYME_CMG157C	M1UQS0	M1UQ70	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	60S ribosomal protein L26.	0.998
CYME_CMH218C	CYME_CMH065C	M1UQS0	M1UQG7	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	60S ribosomal protein L14.	0.999