STRINGSTRING
CYME_CMH034C CYME_CMH034C CYME_CMK254C CYME_CMK254C CYME_CMO175C CYME_CMO175C CYME_CMT626C CYME_CMT626C CYME_CMC047C CYME_CMC047C CYME_CMP054C CYME_CMP054C CYME_CMD139C CYME_CMD139C CYME_CMI230C CYME_CMI230C CYME_CMB035C CYME_CMB035C FEN1 FEN1 CYME_CMH233C CYME_CMH233C CYME_CMK297C CYME_CMK297C CYME_CMN231C CYME_CMN231C CYME_CMQ271C CYME_CMQ271C
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CYME_CMH034CProbable DNA repair endonuclease XPF. (1012 aa)
CYME_CMK254CProbable tRNA splicing endonuclease subunit Sen54. (348 aa)
CYME_CMO175CProtein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (406 aa)
CYME_CMT626CRibonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (297 aa)
CYME_CMC047CStructure-specific endonuclease subunit SLX1 homolog; Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA; Belongs to the SLX1 family. (331 aa)
CYME_CMP054CProbable tRNA splicing endonuclease positive effector Sen1p. (1250 aa)
CYME_CMD139CSimilar to endonuclease III. (276 aa)
CYME_CMI230CSimilar to endonuclease III. (333 aa)
CYME_CMB035CDouble-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (719 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
CYME_CMH233CProbable tRNA splicing endonuclease subunit Sen34. (435 aa)
CYME_CMK297CRibonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (328 aa)
CYME_CMN231CProbable tRNA splicing endonuclease subunit Sen2. (246 aa)
CYME_CMQ271CSimilar to endonuclease. (331 aa)
Your Current Organism:
Cyanidioschyzon merolae
NCBI taxonomy Id: 280699
Other names: C. merolae strain 10D, Cyanidioschyzon merolae strain 10D
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