STRINGSTRING
KKB62348.1 KKB62348.1 KKB61036.1 KKB61036.1 KKB61079.1 KKB61079.1 ubiG ubiG KKB61692.1 KKB61692.1 ubiX ubiX KKB61787.1 KKB61787.1 coq7 coq7 KKB62023.1 KKB62023.1 KKB65388.1 KKB65388.1 ubiE ubiE KKB65445.1 KKB65445.1 KKB64964.1 KKB64964.1 KKB64644.1 KKB64644.1 KKB64693.1 KKB64693.1 KKB64528.1 KKB64528.1 mnmC mnmC KKB64112.1 KKB64112.1 KKB63837.1 KKB63837.1 KKB63856.1 KKB63856.1 KKB63896.1 KKB63896.1 KKB63659.1 KKB63659.1 KKB63533.1 KKB63533.1 KKB63232.1 KKB63232.1 ubiA ubiA menD menD KKB62616.1 KKB62616.1 KKB62653.1 KKB62653.1 ubiC ubiC KKB62269.1 KKB62269.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KKB62348.1Quinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
KKB61036.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)
KKB61079.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)
ubiG3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. (231 aa)
KKB61692.1ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)
ubiXHypothetical protein; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (197 aa)
KKB61787.1Ubiquinone biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
coq72-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis. (209 aa)
KKB62023.14-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
KKB65388.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)
ubiEUbiquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). (243 aa)
KKB65445.1ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (107 aa)
KKB64964.1Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
KKB64644.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
KKB64693.14-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
KKB64528.1ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (94 aa)
mnmCHypothetical protein; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family. (861 aa)
KKB64112.1Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)
KKB63837.1Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (412 aa)
KKB63856.13-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UbiD family. (556 aa)
KKB63896.14-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (147 aa)
KKB63659.1NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)
KKB63533.1Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa)
KKB63232.1ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)
ubiA4-hydroxybenzoate polyprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. (288 aa)
menDHypothetical protein; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). (700 aa)
KKB62616.1Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)
KKB62653.14-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)
ubiCHypothetical protein; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family. (242 aa)
KKB62269.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
Your Current Organism:
Robbsia andropogonis
NCBI taxonomy Id: 28092
Other names: ATCC 19311 [[Pseudomonas woodsii]], ATCC 23061, Aplanobacter stizolobii, Bacterium andropogoni, Bacterium woodsii, Burkholderia andropogonis, CCUG 32772, CFBP 2421, CIP 105771, DSM 9511, DSM 9884 [[Pseudomonas woodsii]], IBSBF 199, ICMP 2807, ICMP 3967 [[Pseudomonas woodsii]], JCM 10487, LMG 2129, LMG 2362 [[Pseudomonas woodsii]], LMG:2129, LMG:2362 [[Pseudomonas woodsii]], NCPPB 934, NCPPB 968 [[Pseudomonas woodsii]], NRRL B-14296, Paraburkholderia andropogonis, Pseudomonas andropogonis, Pseudomonas stizolobii, Pseudomonas woodsii, R. andropogonis, strain PW 102 [[Pseudomonas woodsii]]
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