(39 nodes) Plasma membrane protein complex network (Dechloromonas denitrificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KXB32426.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (81 aa)
	KXB32203.1	LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	KXB32204.1	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
	KXB31936.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
	KXB31656.1	NADH-quinone oxidoreductase subunit L; Derived by automated computational analysis using gene prediction method: Protein Homology. (503 aa)
	cysA	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (356 aa)
	KXB31793.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
	cysA-2	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (355 aa)
	KXB31400.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)
	KXB31401.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (409 aa)
	KXB31414.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	KXB31418.1	Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	tatA	Preprotein translocase subunit TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (78 aa)
	tatB	Preprotein translocase subunit TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. (122 aa)
	tatC	Twin-arginine protein translocation system subunit TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. (270 aa)
	KXB31459.1	Phosphate transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	KXB30901.1	NADP oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
	KXB30909.1	NADH:ubiquinone oxidoreductase subunit M; Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)
	KXB30915.1	NADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (776 aa)
	KXB30917.1	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (157 aa)
	KXB31073.1	Amino acid ABC transporter permease; With GltJLPS and GadC for glutamate and GltJLP, DctA and DcuAB for aspartate is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	KXB31180.1	FTR1 family iron permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	KXB30053.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
	KXB30600.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	KXB30277.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	KXB30362.1	Cobalt transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
	cbiM	Cobalamin biosynthesis protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. (225 aa)
	KXB30521.1	Cytochrome C oxidase Cbb3; CcoN; FixN; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family. (475 aa)
	KXB29933.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (70 aa)
	KXB29381.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)
	KXB29530.1	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	KXB29642.1	Nodulation protein NodJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	KXB29657.1	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	KXB29706.1	Hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (219 aa)
	KXB29716.1	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	KXB29173.1	Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
	KXB28896.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (714 aa)
	KXB28906.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
	ftsE	Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division. (216 aa)

Your Current Organism:

Dechloromonas denitrificans

NCBI taxonomy Id: 281362
Other names: ATCC BAA-841, D. denitrificans, DSM 15892, Dechloromonas denitrificans Horn et al. 2005, strain ED1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KXB28896.1	KXB30362.1	AT959_18875	AT959_13545	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
KXB28906.1	KXB29657.1	AT959_18930	AT959_17140	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
KXB28906.1	KXB31414.1	AT959_18930	AT959_07030	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852
KXB28906.1	KXB31793.1	AT959_18930	AT959_05455	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
KXB28906.1	KXB32203.1	AT959_18930	AT959_03870	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
KXB28906.1	KXB32204.1	AT959_18930	AT959_03875	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
KXB29530.1	KXB30277.1	AT959_16435	AT959_13040	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
KXB29642.1	KXB31418.1	AT959_17055	AT959_07060	Nodulation protein NodJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.582
KXB29642.1	KXB31459.1	AT959_17055	AT959_07295	Nodulation protein NodJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.539
KXB29657.1	KXB28906.1	AT959_17140	AT959_18930	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
KXB29657.1	KXB30053.1	AT959_17140	AT959_11760	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
KXB29657.1	KXB31414.1	AT959_17140	AT959_07030	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494
KXB29657.1	KXB31793.1	AT959_17140	AT959_05455	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
KXB29657.1	KXB32203.1	AT959_17140	AT959_03870	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
KXB29657.1	KXB32204.1	AT959_17140	AT959_03875	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
KXB29716.1	KXB30277.1	AT959_17455	AT959_13040	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.761
KXB30053.1	KXB29657.1	AT959_11760	AT959_17140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
KXB30053.1	KXB30362.1	AT959_11760	AT959_13545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
KXB30277.1	KXB29530.1	AT959_13040	AT959_16435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
KXB30277.1	KXB29716.1	AT959_13040	AT959_17455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.761