(21 nodes) Mixed, incl. Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain), and Putative diguanylate phosphodiesterase network (Yersinia kristensenii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	bdlA	Sensory box protein; [T] COG2202 FOG: PAS/PAC domain. (434 aa)
	cph2_2	GGDEF: diguanylate cyclase domain protein; [T] COG2199 FOG: GGDEF domain. (467 aa)
	gmr_1	GGDEF: diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain. (1116 aa)
	adrA_2	GGDEF: diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain. (693 aa)
	barA	HAMP domain protein; [T] COG0642 Signal transduction histidine kinase. (920 aa)
	rcsC_1	Response regulator; [T] COG0642 Signal transduction histidine kinase. (945 aa)
	nreC_1	Bacterial regulatory s, luxR family protein; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (210 aa)
	CH54_2404	HAMP domain protein; [T] COG2200 FOG: EAL domain. (511 aa)
	CH54_2438	Bacterial regulatory s, luxR family protein; [T] COG0642 Signal transduction histidine kinase. (1332 aa)
	echA8	enoyl-CoA hydratase/isomerase family protein; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase. (288 aa)
	gmr_3	GGDEF: diguanylate cyclase domain protein; [T] COG2200 FOG: EAL domain. (664 aa)
	yhdA	[T] COG2200 FOG: EAL domain. (639 aa)
	arcB	Sensory box protein; [T] COG0642 Signal transduction histidine kinase. (778 aa)
	gmr_2	GGDEF: diguanylate cyclase domain protein; [T] COG2200 FOG: EAL domain. (869 aa)
	pleD	GGDEF: diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain. (335 aa)
	rcsC_3	rcsC Alpha-Beta-Loop family protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. (932 aa)
	ycgG_2	[T] COG2200 FOG: EAL domain. (513 aa)
	CH54_46	Bacterial extracellular solute-binding s, 3 family protein; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (910 aa)
	CH54_585	GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. (742 aa)
	bvgS	Hpt domain protein; [T] COG0642 Signal transduction histidine kinase. (1285 aa)
	cheV	Response regulator; [NT] COG0835 Chemotaxis signal transduction protein. (324 aa)

Your Current Organism:

Yersinia kristensenii

NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CH54_2404	CH54_2438	CH54_2404	CH54_2438	HAMP domain protein; [T] COG2200 FOG: EAL domain.	Bacterial regulatory s, luxR family protein; [T] COG0642 Signal transduction histidine kinase.	0.705
CH54_2404	CH54_46	CH54_2404	CH54_46	HAMP domain protein; [T] COG2200 FOG: EAL domain.	Bacterial extracellular solute-binding s, 3 family protein; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.	0.765
CH54_2404	CH54_585	CH54_2404	CH54_585	HAMP domain protein; [T] COG2200 FOG: EAL domain.	GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	0.887
CH54_2404	adrA_2	CH54_2404	CH54_157	HAMP domain protein; [T] COG2200 FOG: EAL domain.	GGDEF: diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain.	0.977
CH54_2404	arcB	CH54_2404	CH54_3037	HAMP domain protein; [T] COG2200 FOG: EAL domain.	Sensory box protein; [T] COG0642 Signal transduction histidine kinase.	0.937
CH54_2404	barA	CH54_2404	CH54_1711	HAMP domain protein; [T] COG2200 FOG: EAL domain.	HAMP domain protein; [T] COG0642 Signal transduction histidine kinase.	0.947
CH54_2404	bdlA	CH54_2404	CH54_1055	HAMP domain protein; [T] COG2200 FOG: EAL domain.	Sensory box protein; [T] COG2202 FOG: PAS/PAC domain.	0.791
CH54_2404	bvgS	CH54_2404	CH54_896	HAMP domain protein; [T] COG2200 FOG: EAL domain.	Hpt domain protein; [T] COG0642 Signal transduction histidine kinase.	0.704
CH54_2404	cheV	CH54_2404	CH54_903	HAMP domain protein; [T] COG2200 FOG: EAL domain.	Response regulator; [NT] COG0835 Chemotaxis signal transduction protein.	0.810
CH54_2404	cph2_2	CH54_2404	CH54_136	HAMP domain protein; [T] COG2200 FOG: EAL domain.	GGDEF: diguanylate cyclase domain protein; [T] COG2199 FOG: GGDEF domain.	0.955
CH54_2404	echA8	CH54_2404	CH54_2587	HAMP domain protein; [T] COG2200 FOG: EAL domain.	enoyl-CoA hydratase/isomerase family protein; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.572
CH54_2404	gmr_1	CH54_2404	CH54_1365	HAMP domain protein; [T] COG2200 FOG: EAL domain.	GGDEF: diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain.	0.957
CH54_2404	gmr_2	CH54_2404	CH54_3232	HAMP domain protein; [T] COG2200 FOG: EAL domain.	GGDEF: diguanylate cyclase domain protein; [T] COG2200 FOG: EAL domain.	0.843
CH54_2404	gmr_3	CH54_2404	CH54_2588	HAMP domain protein; [T] COG2200 FOG: EAL domain.	GGDEF: diguanylate cyclase domain protein; [T] COG2200 FOG: EAL domain.	0.835
CH54_2404	pleD	CH54_2404	CH54_3870	HAMP domain protein; [T] COG2200 FOG: EAL domain.	GGDEF: diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain.	0.978
CH54_2404	rcsC_1	CH54_2404	CH54_2201	HAMP domain protein; [T] COG2200 FOG: EAL domain.	Response regulator; [T] COG0642 Signal transduction histidine kinase.	0.704
CH54_2404	rcsC_3	CH54_2404	CH54_3966	HAMP domain protein; [T] COG2200 FOG: EAL domain.	rcsC Alpha-Beta-Loop family protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.	0.697
CH54_2404	ycgG_2	CH54_2404	CH54_4114	HAMP domain protein; [T] COG2200 FOG: EAL domain.	[T] COG2200 FOG: EAL domain.	0.457
CH54_2404	yhdA	CH54_2404	CH54_2969	HAMP domain protein; [T] COG2200 FOG: EAL domain.	[T] COG2200 FOG: EAL domain.	0.909
CH54_2438	CH54_2404	CH54_2438	CH54_2404	Bacterial regulatory s, luxR family protein; [T] COG0642 Signal transduction histidine kinase.	HAMP domain protein; [T] COG2200 FOG: EAL domain.	0.705