(15 nodes) Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain), and HPT domain superfamily network (Yersinia kristensenii)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

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protein homology

Your Input:
	bdlA	Sensory box protein; [T] COG2202 FOG: PAS/PAC domain. (434 aa)
	gmr_1	GGDEF: diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain. (1116 aa)
	adrA_2	GGDEF: diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain. (693 aa)
	barA	HAMP domain protein; [T] COG0642 Signal transduction histidine kinase. (920 aa)
	CH54_2404	HAMP domain protein; [T] COG2200 FOG: EAL domain. (511 aa)
	CH54_2438	Bacterial regulatory s, luxR family protein; [T] COG0642 Signal transduction histidine kinase. (1332 aa)
	yhdA	[T] COG2200 FOG: EAL domain. (639 aa)
	arcB	Sensory box protein; [T] COG0642 Signal transduction histidine kinase. (778 aa)
	gmr_2	GGDEF: diguanylate cyclase domain protein; [T] COG2200 FOG: EAL domain. (869 aa)
	pleD	GGDEF: diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain. (335 aa)
	rcsC_3	rcsC Alpha-Beta-Loop family protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. (932 aa)
	CH54_46	Bacterial extracellular solute-binding s, 3 family protein; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (910 aa)
	CH54_585	GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. (742 aa)
	bvgS	Hpt domain protein; [T] COG0642 Signal transduction histidine kinase. (1285 aa)
	cheV	Response regulator; [NT] COG0835 Chemotaxis signal transduction protein. (324 aa)

Your Current Organism:

Yersinia kristensenii

NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CH54_2404	CH54_2438	CH54_2404	CH54_2438	HAMP domain protein; [T] COG2200 FOG: EAL domain.	Bacterial regulatory s, luxR family protein; [T] COG0642 Signal transduction histidine kinase.	0.705
CH54_2404	CH54_46	CH54_2404	CH54_46	HAMP domain protein; [T] COG2200 FOG: EAL domain.	Bacterial extracellular solute-binding s, 3 family protein; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.	0.765
CH54_2404	CH54_585	CH54_2404	CH54_585	HAMP domain protein; [T] COG2200 FOG: EAL domain.	GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	0.887
CH54_2404	adrA_2	CH54_2404	CH54_157	HAMP domain protein; [T] COG2200 FOG: EAL domain.	GGDEF: diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain.	0.977
CH54_2404	arcB	CH54_2404	CH54_3037	HAMP domain protein; [T] COG2200 FOG: EAL domain.	Sensory box protein; [T] COG0642 Signal transduction histidine kinase.	0.937
CH54_2404	barA	CH54_2404	CH54_1711	HAMP domain protein; [T] COG2200 FOG: EAL domain.	HAMP domain protein; [T] COG0642 Signal transduction histidine kinase.	0.947
CH54_2404	bdlA	CH54_2404	CH54_1055	HAMP domain protein; [T] COG2200 FOG: EAL domain.	Sensory box protein; [T] COG2202 FOG: PAS/PAC domain.	0.791
CH54_2404	bvgS	CH54_2404	CH54_896	HAMP domain protein; [T] COG2200 FOG: EAL domain.	Hpt domain protein; [T] COG0642 Signal transduction histidine kinase.	0.704
CH54_2404	cheV	CH54_2404	CH54_903	HAMP domain protein; [T] COG2200 FOG: EAL domain.	Response regulator; [NT] COG0835 Chemotaxis signal transduction protein.	0.810
CH54_2404	gmr_1	CH54_2404	CH54_1365	HAMP domain protein; [T] COG2200 FOG: EAL domain.	GGDEF: diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain.	0.957
CH54_2404	gmr_2	CH54_2404	CH54_3232	HAMP domain protein; [T] COG2200 FOG: EAL domain.	GGDEF: diguanylate cyclase domain protein; [T] COG2200 FOG: EAL domain.	0.843
CH54_2404	pleD	CH54_2404	CH54_3870	HAMP domain protein; [T] COG2200 FOG: EAL domain.	GGDEF: diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain.	0.978
CH54_2404	rcsC_3	CH54_2404	CH54_3966	HAMP domain protein; [T] COG2200 FOG: EAL domain.	rcsC Alpha-Beta-Loop family protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.	0.697
CH54_2404	yhdA	CH54_2404	CH54_2969	HAMP domain protein; [T] COG2200 FOG: EAL domain.	[T] COG2200 FOG: EAL domain.	0.909
CH54_2438	CH54_2404	CH54_2438	CH54_2404	Bacterial regulatory s, luxR family protein; [T] COG0642 Signal transduction histidine kinase.	HAMP domain protein; [T] COG2200 FOG: EAL domain.	0.705
CH54_2438	CH54_46	CH54_2438	CH54_46	Bacterial regulatory s, luxR family protein; [T] COG0642 Signal transduction histidine kinase.	Bacterial extracellular solute-binding s, 3 family protein; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.	0.999
CH54_2438	CH54_585	CH54_2438	CH54_585	Bacterial regulatory s, luxR family protein; [T] COG0642 Signal transduction histidine kinase.	GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	0.845
CH54_2438	adrA_2	CH54_2438	CH54_157	Bacterial regulatory s, luxR family protein; [T] COG0642 Signal transduction histidine kinase.	GGDEF: diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain.	0.999
CH54_2438	arcB	CH54_2438	CH54_3037	Bacterial regulatory s, luxR family protein; [T] COG0642 Signal transduction histidine kinase.	Sensory box protein; [T] COG0642 Signal transduction histidine kinase.	0.999
CH54_2438	barA	CH54_2438	CH54_1711	Bacterial regulatory s, luxR family protein; [T] COG0642 Signal transduction histidine kinase.	HAMP domain protein; [T] COG0642 Signal transduction histidine kinase.	0.999