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dhaR dhaR cph2_1 cph2_1 glnL glnL nreC_2 nreC_2 gmr_3 gmr_3 arcB arcB gmr_2 gmr_2 tyrR tyrR phoR phoR pleD pleD dcuS dcuS citA citA bdlA bdlA aer aer cph2_2 cph2_2 gmr_1 gmr_1 adrA_2 adrA_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dhaRPAS fold family protein; [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism. (639 aa)
cph2_1GGDEF: diguanylate cyclase domain protein; [T] COG2199 FOG: GGDEF domain. (569 aa)
glnLPAS fold family protein; [T] COG3852 Signal transduction histidine kinase, nitrogen specific. (349 aa)
nreC_2Bacterial regulatory s, luxR family protein; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (228 aa)
gmr_3GGDEF: diguanylate cyclase domain protein; [T] COG2200 FOG: EAL domain. (664 aa)
arcBSensory box protein; [T] COG0642 Signal transduction histidine kinase. (778 aa)
gmr_2GGDEF: diguanylate cyclase domain protein; [T] COG2200 FOG: EAL domain. (869 aa)
tyrRHTH_TypR: TyrR family helix-turn-helix domain protein; [KE] COG3283 Transcriptional regulator of aromatic amino acids metabolism. (525 aa)
phoRphoR_proteo: phosphate regulon sensor kinase PhoR; [T] COG0642 Signal transduction histidine kinase. (438 aa)
pleDGGDEF: diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain. (335 aa)
dcuSPAS fold family protein; [T] COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism. (557 aa)
citASensory box protein; [T] COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism. (525 aa)
bdlASensory box protein; [T] COG2202 FOG: PAS/PAC domain. (434 aa)
aerSensory box protein; [NT] COG0840 Methyl-accepting chemotaxis protein. (519 aa)
cph2_2GGDEF: diguanylate cyclase domain protein; [T] COG2199 FOG: GGDEF domain. (467 aa)
gmr_1GGDEF: diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain. (1116 aa)
adrA_2GGDEF: diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain. (693 aa)
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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