STRINGSTRING
CCO56259.1 CCO56259.1 luxR luxR CCO56440.1 CCO56440.1 CCO56724.1 CCO56724.1 CCO56725.1 CCO56725.1 CCO57046.1 CCO57046.1 CCO57210.1 CCO57210.1 CCO57263.1 CCO57263.1 CCO57271.1 CCO57271.1 CCO57395.1 CCO57395.1 CCO57431.1 CCO57431.1 CCO57692.1 CCO57692.1 CCO57927.1 CCO57927.1 CCO57928.1 CCO57928.1 CCO58047.1 CCO58047.1 CCO58145.1 CCO58145.1 CCO58146.1 CCO58146.1 VIBNI_A2084 VIBNI_A2084 CCO58461.1 CCO58461.1 CCO58607.1 CCO58607.1 CCO59060.1 CCO59060.1 CCO59250.1 CCO59250.1 CCO59338.1 CCO59338.1 CCO59518.1 CCO59518.1 CCO59523.1 CCO59523.1 CCO59551.1 CCO59551.1 CCO59793.1 CCO59793.1 parA-2 parA-2 parB-2 parB-2 CCO59870.1 CCO59870.1 CCO59892.1 CCO59892.1 CCO59897.1 CCO59897.1 CCO60599.1 CCO60599.1 prt prt CCO60804.1 CCO60804.1 CCO60805.1 CCO60805.1 CCO60811.1 CCO60811.1 CCO60874.1 CCO60874.1 CCO60900.1 CCO60900.1 CCO60934.1 CCO60934.1 CCO60960.1 CCO60960.1 CCO61045.1 CCO61045.1 CCO61090.1 CCO61090.1 lipA-2 lipA-2 CCO61174.1 CCO61174.1 CCO61214.1 CCO61214.1 CCO61276.1 CCO61276.1 CCO61294.1 CCO61294.1 CCO61295.1 CCO61295.1 CCO61296.1 CCO61296.1 CCO61405.1 CCO61405.1 CCO61457.1 CCO61457.1 CCO61458.1 CCO61458.1 CCO61459.1 CCO61459.1 CCO61460.1 CCO61460.1 CCO61461.1 CCO61461.1 CCO61732.1 CCO61732.1 CCO61783.1 CCO61783.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CCO56259.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (417 aa)
luxRHTH-type transcriptional regulator luxR; Function experimentally demonstrated in the studied genus; regulator. (204 aa)
CCO56440.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (156 aa)
CCO56724.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (238 aa)
CCO56725.1Putative lysozyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (285 aa)
CCO57046.1Putative Signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (438 aa)
CCO57210.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (387 aa)
CCO57263.1Putative Metal-dependent hydrolase HDOD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (307 aa)
CCO57271.1Putative Metalloprotease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (1217 aa)
CCO57395.1Putative protein containing chitin-binding domain type 3; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (391 aa)
CCO57431.1Putative Nucleotidyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (260 aa)
CCO57692.1Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (293 aa)
CCO57927.1Putative nudix hydrolase and phosphatase/haloperoxidase domains containing protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (485 aa)
CCO57928.1Putative Acyl-CoA N-acyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (159 aa)
CCO58047.1Putative 3'-5' EXONUCLEASE ERI1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (176 aa)
CCO58145.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (296 aa)
CCO58146.1Putative Glycine cleavage system regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (170 aa)
VIBNI_A2084Fragment of conserved protein of unknown function (part 1); Homologs of previously reported genes of unknown function. (265 aa)
CCO58461.1Putative SEC-C super family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (197 aa)
CCO58607.1Putative arabinose operon control protein fused with periplasmic ligand-binding sensor domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (1134 aa)
CCO59060.1Putative Lipid A core-O-antigen ligase related enzyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (591 aa)
CCO59250.1Putative ATPase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (463 aa)
CCO59338.1Putative Acyl-CoA N-acyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (141 aa)
CCO59518.1Homologs of previously reported genes of unknown function. (403 aa)
CCO59523.1Putative salt-induced outer membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process. (252 aa)
CCO59551.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (507 aa)
CCO59793.1Putative Sporulation stage 0, protein M family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process. (266 aa)
parA-2Plasmid-partitioning protein ParA; Function of strongly homologous gene; putative cell process. (406 aa)
parB-2Plasmid-partitioning protein parB; Function of strongly homologous gene; factor; Belongs to the ParB family. (324 aa)
CCO59870.1Conserved hypothetical protein with PAS domain and Transcription regulator LuxR, C-terminal part; Homologs of previously reported genes of unknown function. (234 aa)
CCO59892.1Thermolabile hemolysin; Function experimentally demonstrated in the studied genus; enzyme. (417 aa)
CCO59897.1Putative Permease of the major facilitator superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (399 aa)
CCO60599.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (86 aa)
prtMicrobial collagenase; Function experimentally demonstrated in the studied genus; enzyme. (818 aa)
CCO60804.1Putative Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (157 aa)
CCO60805.1Putative DsbA thiol disulfide oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (207 aa)
CCO60811.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (291 aa)
CCO60874.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (144 aa)
CCO60900.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (200 aa)
CCO60934.1Putative Endonuclease/exonuclease/phosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (296 aa)
CCO60960.1Putative Lipase (class 3); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (263 aa)
CCO61045.1Putative Permease of the drug/metabolite transporter (DMT) superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (319 aa)
CCO61090.1Putative Porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (385 aa)
lipA-2Lipase; Function experimentally demonstrated in the studied genus; enzyme. (313 aa)
CCO61174.1Putative Proteobacterial lipase chaperone; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (286 aa)
CCO61214.1Putative Acyl-CoA N-acyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (179 aa)
CCO61276.1Putative glutaredoxin related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier. (205 aa)
CCO61294.1Putative alpha/beta-Hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (281 aa)
CCO61295.1Putative Transcriptional regulator, TetR-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (196 aa)
CCO61296.1Putative auxin efflux carrier; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (315 aa)
CCO61405.1Putative Sporulation control stage 0, protein M family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (247 aa)
CCO61457.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (187 aa)
CCO61458.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (521 aa)
CCO61459.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (753 aa)
CCO61460.1Putative TonB-dependent haemoglobin/transferrin/lactoferrin receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor. (717 aa)
CCO61461.1Putative Peptidase S9A, prolyl oligopeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (668 aa)
CCO61732.1Conserved hypothetical protein carrying metalloproteinase domain; Homologs of previously reported genes of unknown function. (1014 aa)
CCO61783.1Putative Oligoendopeptidase F; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (615 aa)
Your Current Organism:
Vibrio nigripulchritudo
NCBI taxonomy Id: 28173
Other names: ATCC 27043, Beneckea nigrapulchrituda, Beneckea nigripulchritudo, CAIM 323, CCUG 28586, CIP 103195, LMG 3896, LMG:3896, V. nigripulchritudo
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