(8 nodes) RNA polymerase, and Large ribosomal subunit rRNA binding network (Leptospira noguchii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nusA	Unannotated protein; Participates in both transcription termination and antitermination. (460 aa)
	rpoA	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (325 aa)
	nusG	Unannotated protein; Participates in transcription elongation, termination and antitermination. (181 aa)
	rplK	Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (142 aa)
	rplJ	Unannotated protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (177 aa)
	rplL	Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (126 aa)
	rpoB	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1226 aa)
	rpoC	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1404 aa)

Your Current Organism:

Leptospira noguchii

NCBI taxonomy Id: 28182
Other names: ATCC 43288, DSM 21520, L. noguchii, strain CZ 214

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
nusA	nusG	GCA_001568325_01995	GCA_001568325_03693	Unannotated protein; Participates in both transcription termination and antitermination.	Unannotated protein; Participates in transcription elongation, termination and antitermination.	0.958
nusA	rplJ	GCA_001568325_01995	GCA_001568325_03696	Unannotated protein; Participates in both transcription termination and antitermination.	Unannotated protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.944
nusA	rplK	GCA_001568325_01995	GCA_001568325_03694	Unannotated protein; Participates in both transcription termination and antitermination.	Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.972
nusA	rplL	GCA_001568325_01995	GCA_001568325_03697	Unannotated protein; Participates in both transcription termination and antitermination.	Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.908
nusA	rpoA	GCA_001568325_01995	GCA_001568325_03191	Unannotated protein; Participates in both transcription termination and antitermination.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.990
nusA	rpoB	GCA_001568325_01995	GCA_001568325_03698	Unannotated protein; Participates in both transcription termination and antitermination.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.986
nusA	rpoC	GCA_001568325_01995	GCA_001568325_03699	Unannotated protein; Participates in both transcription termination and antitermination.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.982
nusG	nusA	GCA_001568325_03693	GCA_001568325_01995	Unannotated protein; Participates in transcription elongation, termination and antitermination.	Unannotated protein; Participates in both transcription termination and antitermination.	0.958
nusG	rplJ	GCA_001568325_03693	GCA_001568325_03696	Unannotated protein; Participates in transcription elongation, termination and antitermination.	Unannotated protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.991
nusG	rplK	GCA_001568325_03693	GCA_001568325_03694	Unannotated protein; Participates in transcription elongation, termination and antitermination.	Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.996
nusG	rplL	GCA_001568325_03693	GCA_001568325_03697	Unannotated protein; Participates in transcription elongation, termination and antitermination.	Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.991
nusG	rpoA	GCA_001568325_03693	GCA_001568325_03191	Unannotated protein; Participates in transcription elongation, termination and antitermination.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.938
nusG	rpoB	GCA_001568325_03693	GCA_001568325_03698	Unannotated protein; Participates in transcription elongation, termination and antitermination.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.989
nusG	rpoC	GCA_001568325_03693	GCA_001568325_03699	Unannotated protein; Participates in transcription elongation, termination and antitermination.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.975
rplJ	nusA	GCA_001568325_03696	GCA_001568325_01995	Unannotated protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Unannotated protein; Participates in both transcription termination and antitermination.	0.944
rplJ	nusG	GCA_001568325_03696	GCA_001568325_03693	Unannotated protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Unannotated protein; Participates in transcription elongation, termination and antitermination.	0.991
rplJ	rplK	GCA_001568325_03696	GCA_001568325_03694	Unannotated protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.998
rplJ	rplL	GCA_001568325_03696	GCA_001568325_03697	Unannotated protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.999
rplJ	rpoA	GCA_001568325_03696	GCA_001568325_03191	Unannotated protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.979
rplJ	rpoB	GCA_001568325_03696	GCA_001568325_03698	Unannotated protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.995