STRINGSTRING
echA8_2 echA8_2 SFF96837.1 SFF96837.1 serB serB serA serA SFG02784.1 SFG02784.1 SFG04538.1 SFG04538.1 gnl gnl metF metF gcvT_4 gcvT_4 gcvH gcvH gcvP gcvP gndA gndA mcl1 mcl1 accA accA folD folD fhs fhs glyA1 glyA1 gdhA_2 gdhA_2 merA_2 merA_2 SFG19735.1 SFG19735.1 cysE cysE pdhC pdhC bfmBAB bfmBAB acoA acoA fda fda pgk pgk gap_3 gap_3 gap_2 gap_2 tktA tktA eutD eutD eno eno glk glk SFG25054.1 SFG25054.1 icd icd fadA_1 fadA_1 fadJ_1 fadJ_1 glcB glcB pgi pgi pgl pgl gntK gntK SFG54195.1 SFG54195.1 ttuD_1 ttuD_1 SFG60261.1 SFG60261.1 scpA_2 scpA_2 accA1_1 accA1_1 accD5 accD5 eda eda edd edd gltA gltA cysK cysK fumC fumC amdA amdA sbnA sbnA vapC1 vapC1 tktB_1 tktB_1 dxs_2 dxs_2 fabG_7 fabG_7 hprA hprA ttuD_2 ttuD_2 tktB_2 tktB_2 hxlB hxlB fitB_2 fitB_2 fadA_3 fadA_3 glpX glpX mmsA mmsA gpgP gpgP tpiA tpiA lpd lpd SFG76779.1 SFG76779.1 acsA_2 acsA_2 fitB_1 fitB_1 katE katE glyA2 glyA2 sdaA sdaA acnA acnA SFG83887.1 SFG83887.1 zwf zwf nqo1_2 nqo1_2 SFG37269.1 SFG37269.1 accC accC accB accB dme dme fabG_3 fabG_3 cfiB cfiB prs prs phaJ phaJ mmgC_3 mmgC_3 pckA pckA mmgB mmgB SFG41736.1 SFG41736.1 phbA phbA SFG36181.1 SFG36181.1 flhA_1 flhA_1 maeB maeB psdht psdht SFG48902.1 SFG48902.1 rpe rpe SFG46358.1 SFG46358.1 ppdK ppdK kdgK_1 kdgK_1 iolJ iolJ gap_1 gap_1 SFF78345.1 SFF78345.1 SFF79517.1 SFF79517.1 fgd1 fgd1 sdhB sdhB sdhA sdhA SFF80523.1 SFF80523.1 sdhC sdhC tal tal SFF80603.1 SFF80603.1 mcl2 mcl2 mdh mdh sucC sucC sucD sucD sucA sucA sucB sucB lpd3 lpd3 tdcB_1 tdcB_1 tdcB_2 tdcB_2 ilvA ilvA fadH fadH caiD_1 caiD_1 rpiA rpiA fghA fghA accD accD gpmI gpmI merA_1 merA_1 lcdH_1 lcdH_1 mmgC_1 mmgC_1 SFF90101.1 SFF90101.1 SFF90144.1 SFF90144.1 citE citE SFF90356.1 SFF90356.1 ttuE ttuE SFF98256.1 SFF98256.1 arcC2 arcC2 fadA_2 fadA_2 fadJ_2 fadJ_2 scpA_3 scpA_3 ccrA2 ccrA2
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second shell of interactors
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proteins of unknown 3D structure
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a 3D structure is known or predicted
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gene neighborhood
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echA8_2enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)
SFF96837.1Uncharacterized conserved protein. (137 aa)
serBPhosphoserine phosphatase. (291 aa)
serAD-3-phosphoglycerate dehydrogenase/phosphoserine aminotransferase,TIGR01365/phosphoserine aminotransferase, putative,TIGR01366; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (926 aa)
SFG02784.1Hypothetical protein. (185 aa)
SFG04538.1Formate dehydrogenase major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (922 aa)
gnlGluconolactonase. (298 aa)
metF5,10-methylenetetrahydrofolate reductase (NAD(P)); Belongs to the methylenetetrahydrofolate reductase family. (289 aa)
gcvT_4Aminomethyltransferase. (369 aa)
gcvHGlycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (118 aa)
gcvPGlycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. (944 aa)
gndA6-phosphogluconate dehydrogenase (decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. (471 aa)
mcl1beta-methylmalyl-CoA/L-malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. (325 aa)
accAacetyl-CoA carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (320 aa)
folDMethylenetetrahydrofolate dehydrogenase (NADP+); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (296 aa)
fhsFormate-tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family. (558 aa)
glyA1Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (431 aa)
gdhA_2Glutamate dehydrogenase (NAD(P)+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (475 aa)
merA_2Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component. (470 aa)
SFG19735.1Hypothetical protein. (175 aa)
cysESerine O-acetyltransferase. (272 aa)
pdhCPyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (442 aa)
bfmBABPyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. (460 aa)
acoAPyruvate dehydrogenase E1 component alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (339 aa)
fdaFructose-bisphosphate aldolase, class I. (296 aa)
pgkPhosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. (392 aa)
gap_3Glyceraldehyde-3-phosphate dehydrogenase (NAD+); Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (359 aa)
gap_2Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (332 aa)
tktATransketolase; Belongs to the transketolase family. (676 aa)
eutDPhosphotransacetylase. (323 aa)
enoEnolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (425 aa)
glkGlucokinase; Belongs to the bacterial glucokinase family. (318 aa)
SFG25054.1Methylenetetrahydrofolate reductase (NADPH). (298 aa)
icdIsocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family. (404 aa)
fadA_1acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (403 aa)
fadJ_13-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase. (729 aa)
glcBMalate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. (720 aa)
pgiGlucose-6-phosphate isomerase; Belongs to the GPI family. (529 aa)
pgl6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. (223 aa)
gntKGluconate kinase, SKI family. (165 aa)
SFG54195.1Antitoxin CptB. (88 aa)
ttuD_1Hydroxypyruvate reductase. (401 aa)
SFG60261.1Trimethylamine---corrinoid protein Co-methyltransferase; Belongs to the trimethylamine methyltransferase family. (509 aa)
scpA_2methylmalonyl-CoA mutase. (711 aa)
accA1_1Biotin carboxyl carrier protein /biotin carboxylase. (669 aa)
accD5propionyl-CoA carboxylase carboxyltransferase subunit. (510 aa)
eda2-keto-3-deoxy-phosphogluconate aldolase. (210 aa)
edd6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. (601 aa)
gltACitrate synthase; Belongs to the citrate synthase family. (431 aa)
cysKCysteine synthase A. (342 aa)
fumCFumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (463 aa)
amdAAcetamidase/formamidase. (311 aa)
sbnACysteine synthase A. (381 aa)
vapC1tRNA(fMet)-specific endonuclease VapC; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (129 aa)
tktB_1Transketolase subunit A. (284 aa)
dxs_2Transketolase. (345 aa)
fabG_7NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. (250 aa)
hprAGlycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (321 aa)
ttuD_2Glycerate 2-kinase. (422 aa)
tktB_2Transketolase; Belongs to the transketolase family. (676 aa)
hxlB3-hexulose-6-phosphate isomerase. (188 aa)
fitB_2Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (137 aa)
fadA_3acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (390 aa)
glpXFructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase. (319 aa)
mmsAMethylmalonate-semialdehyde dehydrogenase [acylating]. (498 aa)
gpgPProbable phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. (200 aa)
tpiATriosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (235 aa)
lpdDihydrolipoamide dehydrogenase. (464 aa)
SFG76779.1Uncharacterized conserved protein, contains ferritin-like DUF455 domain. (269 aa)
acsA_2Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. (651 aa)
fitB_1Hypothetical protein. (142 aa)
katECatalase; Serves to protect cells from the toxic effects of hydrogen peroxide. (698 aa)
glyA2Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (420 aa)
sdaAL-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. (472 aa)
acnAAconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (924 aa)
SFG83887.1Hypothetical protein. (140 aa)
zwfGlucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. (483 aa)
nqo1_2NAD-dependent formate dehydrogenase flavoprotein subunit. (568 aa)
SFG37269.1Arsenate reductase; Belongs to the ArsC family. (110 aa)
accCacetyl-CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (448 aa)
accBBiotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (159 aa)
dmeMalate dehydrogenase (oxaloacetate-decarboxylating)(NADP+). (763 aa)
fabG_33-oxoacyl-[acyl-carrier-protein] reductase. (241 aa)
cfiBPyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1146 aa)
prsRibose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (341 aa)
phaJ3-hydroxybutyryl-CoA dehydratase. (147 aa)
mmgC_3(2S)-methylsuccinyl-CoA dehydrogenase. (564 aa)
pckAPhosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (531 aa)
mmgB3-hydroxyacyl-CoA dehydrogenase. (292 aa)
SFG41736.1Hypothetical protein. (272 aa)
phbAacetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
SFG36181.1Alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase. (410 aa)
flhA_1S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (370 aa)
maeBAllosteric NADP-dependent malic enzyme. (759 aa)
psdhtThreonine dehydratase. (326 aa)
SFG48902.1Serine-glyoxylate aminotransferase apoenzyme. (395 aa)
rpeRibulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (231 aa)
SFG46358.1Aspartate aminotransferase. (376 aa)
ppdKPyruvate phosphate dikinase. (856 aa)
kdgK_12-dehydro-3-deoxygluconokinase. (302 aa)
iolJFructose-bisphosphate aldolase. (271 aa)
gap_1Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (328 aa)
SFF78345.1methylmalonyl-CoA epimerase. (134 aa)
SFF79517.1Hypothetical protein. (546 aa)
fgd1Probable non-F420 flavinoid oxidoreductase. (323 aa)
sdhBSuccinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (259 aa)
sdhASuccinate dehydrogenase subunit A; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (603 aa)
SFF80523.1Succinate dehydrogenase subunit D. (123 aa)
sdhCSuccinate dehydrogenase subunit C. (127 aa)
talTransaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. (243 aa)
SFF80603.1L-erythro-3-methylmalyl-CoA dehydratase. (342 aa)
mcl2(3S)-malyl-CoA thioesterase; Belongs to the HpcH/HpaI aldolase family. (285 aa)
mdhMalate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (320 aa)
sucCsuccinyl-CoA synthetase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (397 aa)
sucDsuccinyl-CoA synthetase (ADP-forming) alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (295 aa)
sucA2-oxoglutarate dehydrogenase E1 component. (985 aa)
sucB2-oxoglutarate dehydrogenase E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (509 aa)
lpd3Dihydrolipoamide dehydrogenase. (464 aa)
tdcB_1Threonine dehydratase. (322 aa)
tdcB_2Threonine dehydratase. (315 aa)
ilvAL-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. (419 aa)
fadH2,4-dienoyl-CoA reductase (NADPH2). (673 aa)
caiD_1Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (200 aa)
rpiARibose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (262 aa)
fghAS-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde. (268 aa)
accDacetyl-CoA carboxylase carboxyltransferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (312 aa)
gpmIPhosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. (503 aa)
merA_1Dihydrolipoamide dehydrogenase. (469 aa)
lcdH_1Carnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine. (498 aa)
mmgC_1acyl-CoA dehydrogenase. (388 aa)
SFF90101.1Acetyl-CoA acetyltransferase. (383 aa)
SFF90144.1N-terminal half of MaoC dehydratase. (287 aa)
citECitrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. (271 aa)
SFF90356.13-methylfumaryl-CoA hydratase. (275 aa)
ttuEPyruvate kinase; Belongs to the pyruvate kinase family. (481 aa)
SFF98256.1Uncharacterized conserved protein. (137 aa)
arcC2Carbamate kinase; Belongs to the carbamate kinase family. (313 aa)
fadA_2acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
fadJ_2Short chain enoyl-CoA hydratase. (693 aa)
scpA_3(R)-ethylmalonyl-CoA mutase. (653 aa)
ccrA2crotonyl-CoA carboxylase/reductase. (430 aa)
Your Current Organism:
Jannaschia rubra
NCBI taxonomy Id: 282197
Other names: CECT 5088, DSM 16279, J. rubra, Jannaschia rubra Macian et al. 2005, strain 4SM3
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