(6 nodes) PRC1 complex network (Anolis carolinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RNF2	Ring finger protein 2. (336 aa)
	phc2	Uncharacterized protein. (291 aa)
	CBX4	Chromobox 4. (513 aa)
	CBX8	Chromobox 8. (365 aa)
	CBX2	Chromobox 2. (551 aa)
	LOC100567594	RING-type domain-containing protein. (323 aa)

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBX2	CBX4	ENSACAP00000020251	ENSACAP00000015752	Chromobox 2.	Chromobox 4.	0.951
CBX2	CBX8	ENSACAP00000020251	ENSACAP00000015766	Chromobox 2.	Chromobox 8.	0.900
CBX2	LOC100567594	ENSACAP00000020251	ENSACAP00000020901	Chromobox 2.	RING-type domain-containing protein.	0.900
CBX2	RNF2	ENSACAP00000020251	ENSACAP00000002339	Chromobox 2.	Ring finger protein 2.	0.923
CBX2	phc2	ENSACAP00000020251	ENSACAP00000004126	Chromobox 2.	Uncharacterized protein.	0.922
CBX4	CBX2	ENSACAP00000015752	ENSACAP00000020251	Chromobox 4.	Chromobox 2.	0.951
CBX4	CBX8	ENSACAP00000015752	ENSACAP00000015766	Chromobox 4.	Chromobox 8.	0.952
CBX4	LOC100567594	ENSACAP00000015752	ENSACAP00000020901	Chromobox 4.	RING-type domain-containing protein.	0.928
CBX4	RNF2	ENSACAP00000015752	ENSACAP00000002339	Chromobox 4.	Ring finger protein 2.	0.923
CBX4	phc2	ENSACAP00000015752	ENSACAP00000004126	Chromobox 4.	Uncharacterized protein.	0.900
CBX8	CBX2	ENSACAP00000015766	ENSACAP00000020251	Chromobox 8.	Chromobox 2.	0.900
CBX8	CBX4	ENSACAP00000015766	ENSACAP00000015752	Chromobox 8.	Chromobox 4.	0.952
CBX8	LOC100567594	ENSACAP00000015766	ENSACAP00000020901	Chromobox 8.	RING-type domain-containing protein.	0.931
CBX8	RNF2	ENSACAP00000015766	ENSACAP00000002339	Chromobox 8.	Ring finger protein 2.	0.953
CBX8	phc2	ENSACAP00000015766	ENSACAP00000004126	Chromobox 8.	Uncharacterized protein.	0.854
LOC100567594	CBX2	ENSACAP00000020901	ENSACAP00000020251	RING-type domain-containing protein.	Chromobox 2.	0.900
LOC100567594	CBX4	ENSACAP00000020901	ENSACAP00000015752	RING-type domain-containing protein.	Chromobox 4.	0.928
LOC100567594	CBX8	ENSACAP00000020901	ENSACAP00000015766	RING-type domain-containing protein.	Chromobox 8.	0.931
LOC100567594	RNF2	ENSACAP00000020901	ENSACAP00000002339	RING-type domain-containing protein.	Ring finger protein 2.	0.953
LOC100567594	phc2	ENSACAP00000020901	ENSACAP00000004126	RING-type domain-containing protein.	Uncharacterized protein.	0.853