(6 nodes) Prespliceosome, and PWI, domain in splicing factors network (Anolis carolinensis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LUC7L	LUC7 like. (367 aa)
	PRPF39	Pre-mRNA processing factor 39. (666 aa)
	PRPF40B	Pre-mRNA processing factor 40 homolog B. (875 aa)
	SNRPC	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (180 aa)
	RBM25	RNA binding motif protein 25. (837 aa)
	TRNAU1AP	tRNA selenocysteine 1 associated protein 1. (294 aa)

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LUC7L	PRPF39	ENSACAP00000001635	ENSACAP00000003944	LUC7 like.	Pre-mRNA processing factor 39.	0.914
LUC7L	PRPF40B	ENSACAP00000001635	ENSACAP00000008916	LUC7 like.	Pre-mRNA processing factor 40 homolog B.	0.920
LUC7L	RBM25	ENSACAP00000001635	ENSACAP00000016015	LUC7 like.	RNA binding motif protein 25.	0.960
LUC7L	SNRPC	ENSACAP00000001635	ENSACAP00000015455	LUC7 like.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.956
LUC7L	TRNAU1AP	ENSACAP00000001635	ENSACAP00000018607	LUC7 like.	tRNA selenocysteine 1 associated protein 1.	0.805
PRPF39	LUC7L	ENSACAP00000003944	ENSACAP00000001635	Pre-mRNA processing factor 39.	LUC7 like.	0.914
PRPF39	PRPF40B	ENSACAP00000003944	ENSACAP00000008916	Pre-mRNA processing factor 39.	Pre-mRNA processing factor 40 homolog B.	0.931
PRPF39	RBM25	ENSACAP00000003944	ENSACAP00000016015	Pre-mRNA processing factor 39.	RNA binding motif protein 25.	0.952
PRPF39	SNRPC	ENSACAP00000003944	ENSACAP00000015455	Pre-mRNA processing factor 39.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.971
PRPF39	TRNAU1AP	ENSACAP00000003944	ENSACAP00000018607	Pre-mRNA processing factor 39.	tRNA selenocysteine 1 associated protein 1.	0.954
PRPF40B	LUC7L	ENSACAP00000008916	ENSACAP00000001635	Pre-mRNA processing factor 40 homolog B.	LUC7 like.	0.920
PRPF40B	PRPF39	ENSACAP00000008916	ENSACAP00000003944	Pre-mRNA processing factor 40 homolog B.	Pre-mRNA processing factor 39.	0.931
PRPF40B	RBM25	ENSACAP00000008916	ENSACAP00000016015	Pre-mRNA processing factor 40 homolog B.	RNA binding motif protein 25.	0.971
PRPF40B	SNRPC	ENSACAP00000008916	ENSACAP00000015455	Pre-mRNA processing factor 40 homolog B.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.958
PRPF40B	TRNAU1AP	ENSACAP00000008916	ENSACAP00000018607	Pre-mRNA processing factor 40 homolog B.	tRNA selenocysteine 1 associated protein 1.	0.813
RBM25	LUC7L	ENSACAP00000016015	ENSACAP00000001635	RNA binding motif protein 25.	LUC7 like.	0.960
RBM25	PRPF39	ENSACAP00000016015	ENSACAP00000003944	RNA binding motif protein 25.	Pre-mRNA processing factor 39.	0.952
RBM25	PRPF40B	ENSACAP00000016015	ENSACAP00000008916	RNA binding motif protein 25.	Pre-mRNA processing factor 40 homolog B.	0.971
RBM25	SNRPC	ENSACAP00000016015	ENSACAP00000015455	RNA binding motif protein 25.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.997
RBM25	TRNAU1AP	ENSACAP00000016015	ENSACAP00000018607	RNA binding motif protein 25.	tRNA selenocysteine 1 associated protein 1.	0.926