(23 nodes) Transport of the SLBP independent Mature mRNA network (Anolis carolinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AHCTF1	AT-hook containing transcription factor 1. (2272 aa)
	NUP133	Nucleoporin 133. (1144 aa)
	RANBP2	RAN binding protein 2. (2819 aa)
	NUP58	Nucleoporin 58. (595 aa)
	NUP107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (1052 aa)
	AAAS	Aladin WD repeat nucleoporin. (507 aa)
	NUP85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (651 aa)
	NUP43	Nucleoporin 43. (391 aa)
	NUP93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (748 aa)
	NUP35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (327 aa)
	NDC1	NDC1 transmembrane nucleoporin. (670 aa)
	NUP160	Nucleoporin 160. (1437 aa)
	LOC100555044	Nucleoporin_N domain-containing protein. (631 aa)
	NUP205	Nucleoporin 205. (2013 aa)
	NUP54	Nucleoporin 54. (512 aa)
	NUP62	Nucleoporin 62. (599 aa)
	NUP88	Nucleoporin 88. (262 aa)
	NUP37	Nucleoporin 37. (326 aa)
	H9GQI4_ANOCA	Nucleoporin_C domain-containing protein. (498 aa)
	H9GTP0_ANOCA	Nucleoporin_N domain-containing protein. (572 aa)
	LOC103282979	Uncharacterized protein. (145 aa)
	nup188	Uncharacterized protein. (516 aa)
	LOC103282085	Nup214_FG domain-containing protein. (450 aa)

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAAS	AHCTF1	ENSACAP00000005321	ENSACAP00000000336	Aladin WD repeat nucleoporin.	AT-hook containing transcription factor 1.	0.590
AAAS	H9GQI4_ANOCA	ENSACAP00000005321	ENSACAP00000018210	Aladin WD repeat nucleoporin.	Nucleoporin_C domain-containing protein.	0.875
AAAS	H9GTP0_ANOCA	ENSACAP00000005321	ENSACAP00000020220	Aladin WD repeat nucleoporin.	Nucleoporin_N domain-containing protein.	0.875
AAAS	LOC100555044	ENSACAP00000005321	ENSACAP00000009553	Aladin WD repeat nucleoporin.	Nucleoporin_N domain-containing protein.	0.875
AAAS	LOC103282085	ENSACAP00000005321	ENSACAP00000021661	Aladin WD repeat nucleoporin.	Nup214_FG domain-containing protein.	0.849
AAAS	LOC103282979	ENSACAP00000005321	ENSACAP00000020948	Aladin WD repeat nucleoporin.	Uncharacterized protein.	0.849
AAAS	NDC1	ENSACAP00000005321	ENSACAP00000008744	Aladin WD repeat nucleoporin.	NDC1 transmembrane nucleoporin.	0.981
AAAS	NUP107	ENSACAP00000005321	ENSACAP00000004064	Aladin WD repeat nucleoporin.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.965
AAAS	NUP133	ENSACAP00000005321	ENSACAP00000001012	Aladin WD repeat nucleoporin.	Nucleoporin 133.	0.904
AAAS	NUP160	ENSACAP00000005321	ENSACAP00000009243	Aladin WD repeat nucleoporin.	Nucleoporin 160.	0.901
AAAS	NUP205	ENSACAP00000005321	ENSACAP00000011330	Aladin WD repeat nucleoporin.	Nucleoporin 205.	0.973
AAAS	NUP35	ENSACAP00000005321	ENSACAP00000008531	Aladin WD repeat nucleoporin.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.958
AAAS	NUP37	ENSACAP00000005321	ENSACAP00000016281	Aladin WD repeat nucleoporin.	Nucleoporin 37.	0.852
AAAS	NUP43	ENSACAP00000005321	ENSACAP00000006676	Aladin WD repeat nucleoporin.	Nucleoporin 43.	0.927
AAAS	NUP54	ENSACAP00000005321	ENSACAP00000012454	Aladin WD repeat nucleoporin.	Nucleoporin 54.	0.966
AAAS	NUP58	ENSACAP00000005321	ENSACAP00000002255	Aladin WD repeat nucleoporin.	Nucleoporin 58.	0.811
AAAS	NUP62	ENSACAP00000005321	ENSACAP00000013924	Aladin WD repeat nucleoporin.	Nucleoporin 62.	0.809
AAAS	NUP85	ENSACAP00000005321	ENSACAP00000006131	Aladin WD repeat nucleoporin.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.954
AAAS	NUP88	ENSACAP00000005321	ENSACAP00000015171	Aladin WD repeat nucleoporin.	Nucleoporin 88.	0.957
AAAS	NUP93	ENSACAP00000005321	ENSACAP00000007427	Aladin WD repeat nucleoporin.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.972