16 items (Anolis carolinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GTF2H1	General transcription factor IIH subunit 1. (571 aa)
	TAF1B	TATA-box binding protein associated factor, RNA polymerase I subunit B. (660 aa)
	RRN3	RRN3 homolog, RNA polymerase I transcription factor. (611 aa)
	LOC103281873	Uncharacterized protein. (309 aa)
	tcof1	LisH domain-containing protein. (934 aa)
	LOC103282265	Uncharacterized protein. (414 aa)
	CAVIN1	Caveolae associated protein 1. (369 aa)
	PIH1D1	PIH1 domain containing 1. (305 aa)
	ubtf	Uncharacterized protein. (760 aa)
	POLR2L	RNA polymerase II subunit L. (67 aa)
	POLR1A	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1704 aa)
	ERCC6	ERCC excision repair 6, chromatin remodeling factor. (1440 aa)
	ZNRD1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (120 aa)
	SMARCB1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1. (271 aa)
	LOC103282760	Uncharacterized protein. (271 aa)
	POLR1C	RNA polymerase I and III subunit C. (348 aa)

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAVIN1	POLR1A	ENSACAP00000017663	ENSACAP00000012126	Caveolae associated protein 1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.564
ERCC6	GTF2H1	ENSACAP00000011492	ENSACAP00000000059	ERCC excision repair 6, chromatin remodeling factor.	General transcription factor IIH subunit 1.	0.781
ERCC6	POLR1A	ENSACAP00000011492	ENSACAP00000012126	ERCC excision repair 6, chromatin remodeling factor.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.720
ERCC6	POLR1C	ENSACAP00000011492	ENSACAP00000009594	ERCC excision repair 6, chromatin remodeling factor.	RNA polymerase I and III subunit C.	0.674
ERCC6	POLR2L	ENSACAP00000011492	ENSACAP00000015241	ERCC excision repair 6, chromatin remodeling factor.	RNA polymerase II subunit L.	0.962
ERCC6	ZNRD1	ENSACAP00000011492	ENSACAP00000011295	ERCC excision repair 6, chromatin remodeling factor.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.611
ERCC6	ubtf	ENSACAP00000011492	ENSACAP00000016948	ERCC excision repair 6, chromatin remodeling factor.	Uncharacterized protein.	0.508
GTF2H1	ERCC6	ENSACAP00000000059	ENSACAP00000011492	General transcription factor IIH subunit 1.	ERCC excision repair 6, chromatin remodeling factor.	0.781
GTF2H1	LOC103281873	ENSACAP00000000059	ENSACAP00000022663	General transcription factor IIH subunit 1.	Uncharacterized protein.	0.427
GTF2H1	LOC103282265	ENSACAP00000000059	ENSACAP00000018360	General transcription factor IIH subunit 1.	Uncharacterized protein.	0.427
GTF2H1	POLR1A	ENSACAP00000000059	ENSACAP00000012126	General transcription factor IIH subunit 1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.707
GTF2H1	POLR1C	ENSACAP00000000059	ENSACAP00000009594	General transcription factor IIH subunit 1.	RNA polymerase I and III subunit C.	0.905
GTF2H1	POLR2L	ENSACAP00000000059	ENSACAP00000015241	General transcription factor IIH subunit 1.	RNA polymerase II subunit L.	0.964
GTF2H1	ZNRD1	ENSACAP00000000059	ENSACAP00000011295	General transcription factor IIH subunit 1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.813
GTF2H1	ubtf	ENSACAP00000000059	ENSACAP00000016948	General transcription factor IIH subunit 1.	Uncharacterized protein.	0.701
LOC103281873	GTF2H1	ENSACAP00000022663	ENSACAP00000000059	Uncharacterized protein.	General transcription factor IIH subunit 1.	0.427
LOC103281873	LOC103282265	ENSACAP00000022663	ENSACAP00000018360	Uncharacterized protein.	Uncharacterized protein.	0.780
LOC103281873	POLR1A	ENSACAP00000022663	ENSACAP00000012126	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.510
LOC103281873	POLR1C	ENSACAP00000022663	ENSACAP00000009594	Uncharacterized protein.	RNA polymerase I and III subunit C.	0.427
LOC103281873	RRN3	ENSACAP00000022663	ENSACAP00000003861	Uncharacterized protein.	RRN3 homolog, RNA polymerase I transcription factor.	0.659