(28 nodes) Structural constituent of nuclear pore network (Anolis carolinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nup188	Uncharacterized protein. (516 aa)
	LOC103282979	Uncharacterized protein. (145 aa)
	H9GTP0_ANOCA	Nucleoporin_N domain-containing protein. (572 aa)
	H9GQI4_ANOCA	Nucleoporin_C domain-containing protein. (498 aa)
	NUP88	Nucleoporin 88. (262 aa)
	NUP62	Nucleoporin 62. (599 aa)
	NUP98	Nucleoporin 98. (1201 aa)
	LOC107982271	Uncharacterized protein. (178 aa)
	LOC100559143	Uncharacterized protein. (464 aa)
	NUP210	Nucleoporin 210. (1990 aa)
	NUP54	Nucleoporin 54. (512 aa)
	NUP210L	Nucleoporin 210 like. (1888 aa)
	NUP205	Nucleoporin 205. (2013 aa)
	NUTF2	Nuclear transport factor 2. (137 aa)
	LOC100555044	Nucleoporin_N domain-containing protein. (631 aa)
	NUP160	Nucleoporin 160. (1437 aa)
	LOC103282244	Fanconi_A_N domain-containing protein. (162 aa)
	NDC1	NDC1 transmembrane nucleoporin. (670 aa)
	NUP35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (327 aa)
	LOC103281772	Uncharacterized protein. (284 aa)
	NUP93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (748 aa)
	NUP85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (651 aa)
	NUP153	Nucleoporin 153. (1427 aa)
	NUP107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (1052 aa)
	NUP58	Nucleoporin 58. (595 aa)
	TPR	Translocated promoter region, nuclear basket protein. (2366 aa)
	NUP133	Nucleoporin 133. (1144 aa)
	LOC103282085	Nup214_FG domain-containing protein. (450 aa)

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H9GQI4_ANOCA	H9GTP0_ANOCA	ENSACAP00000018210	ENSACAP00000020220	Nucleoporin_C domain-containing protein.	Nucleoporin_N domain-containing protein.	0.975
H9GQI4_ANOCA	LOC100555044	ENSACAP00000018210	ENSACAP00000009553	Nucleoporin_C domain-containing protein.	Nucleoporin_N domain-containing protein.	0.942
H9GQI4_ANOCA	LOC100559143	ENSACAP00000018210	ENSACAP00000013558	Nucleoporin_C domain-containing protein.	Uncharacterized protein.	0.745
H9GQI4_ANOCA	LOC103282085	ENSACAP00000018210	ENSACAP00000021661	Nucleoporin_C domain-containing protein.	Nup214_FG domain-containing protein.	0.810
H9GQI4_ANOCA	LOC103282979	ENSACAP00000018210	ENSACAP00000020948	Nucleoporin_C domain-containing protein.	Uncharacterized protein.	0.810
H9GQI4_ANOCA	LOC107982271	ENSACAP00000018210	ENSACAP00000013807	Nucleoporin_C domain-containing protein.	Uncharacterized protein.	0.844
H9GQI4_ANOCA	NDC1	ENSACAP00000018210	ENSACAP00000008744	Nucleoporin_C domain-containing protein.	NDC1 transmembrane nucleoporin.	0.878
H9GQI4_ANOCA	NUP107	ENSACAP00000018210	ENSACAP00000004064	Nucleoporin_C domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.929
H9GQI4_ANOCA	NUP133	ENSACAP00000018210	ENSACAP00000001012	Nucleoporin_C domain-containing protein.	Nucleoporin 133.	0.938
H9GQI4_ANOCA	NUP153	ENSACAP00000018210	ENSACAP00000004070	Nucleoporin_C domain-containing protein.	Nucleoporin 153.	0.854
H9GQI4_ANOCA	NUP160	ENSACAP00000018210	ENSACAP00000009243	Nucleoporin_C domain-containing protein.	Nucleoporin 160.	0.931
H9GQI4_ANOCA	NUP205	ENSACAP00000018210	ENSACAP00000011330	Nucleoporin_C domain-containing protein.	Nucleoporin 205.	0.981
H9GQI4_ANOCA	NUP210	ENSACAP00000018210	ENSACAP00000012664	Nucleoporin_C domain-containing protein.	Nucleoporin 210.	0.722
H9GQI4_ANOCA	NUP210L	ENSACAP00000018210	ENSACAP00000011633	Nucleoporin_C domain-containing protein.	Nucleoporin 210 like.	0.722
H9GQI4_ANOCA	NUP35	ENSACAP00000018210	ENSACAP00000008531	Nucleoporin_C domain-containing protein.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.903
H9GQI4_ANOCA	NUP54	ENSACAP00000018210	ENSACAP00000012454	Nucleoporin_C domain-containing protein.	Nucleoporin 54.	0.930
H9GQI4_ANOCA	NUP58	ENSACAP00000018210	ENSACAP00000002255	Nucleoporin_C domain-containing protein.	Nucleoporin 58.	0.847
H9GQI4_ANOCA	NUP62	ENSACAP00000018210	ENSACAP00000013924	Nucleoporin_C domain-containing protein.	Nucleoporin 62.	0.917
H9GQI4_ANOCA	NUP85	ENSACAP00000018210	ENSACAP00000006131	Nucleoporin_C domain-containing protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.925
H9GQI4_ANOCA	NUP88	ENSACAP00000018210	ENSACAP00000015171	Nucleoporin_C domain-containing protein.	Nucleoporin 88.	0.858