(14 nodes) SMN-Sm protein complex network (Anolis carolinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	STRAP	Serine/threonine kinase receptor associated protein. (350 aa)
	SNRPD2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	GEMIN4	Gem nuclear organelle associated protein 4. (1010 aa)
	GEMIN2	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (265 aa)
	GEMIN5	Gem nuclear organelle associated protein 5. (1507 aa)
	GEMIN8	Gem nuclear organelle associated protein 8. (225 aa)
	SNRPB	Small nuclear ribonucleoprotein-associated protein. (232 aa)
	SNRPD3	Small nuclear ribonucleoprotein D3 polypeptide. (94 aa)
	SNRPG	Small nuclear ribonucleoprotein G. (76 aa)
	SNRPD1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	DDX20	DEAD-box helicase 20; Belongs to the DEAD box helicase family. (752 aa)
	GEMIN7	Gem nuclear organelle associated protein 7. (132 aa)
	LOC100553231	Tudor domain-containing protein. (279 aa)
	SNRPF	Small nuclear ribonucleoprotein polypeptide F. (87 aa)

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX20	GEMIN2	ENSACAP00000006167	ENSACAP00000015604	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.996
DDX20	GEMIN4	ENSACAP00000006167	ENSACAP00000015722	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Gem nuclear organelle associated protein 4.	0.997
DDX20	GEMIN5	ENSACAP00000006167	ENSACAP00000003886	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Gem nuclear organelle associated protein 5.	0.996
DDX20	GEMIN7	ENSACAP00000006167	ENSACAP00000004144	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Gem nuclear organelle associated protein 7.	0.994
DDX20	GEMIN8	ENSACAP00000006167	ENSACAP00000001873	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Gem nuclear organelle associated protein 8.	0.992
DDX20	LOC100553231	ENSACAP00000006167	ENSACAP00000009875	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Tudor domain-containing protein.	0.997
DDX20	SNRPB	ENSACAP00000006167	ENSACAP00000002014	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein-associated protein.	0.613
DDX20	SNRPD1	ENSACAP00000006167	ENSACAP00000006209	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.807
DDX20	SNRPD2	ENSACAP00000006167	ENSACAP00000016502	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein Sm D2.	0.712
DDX20	SNRPD3	ENSACAP00000006167	ENSACAP00000003218	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein D3 polypeptide.	0.885
DDX20	SNRPF	ENSACAP00000006167	ENSACAP00000013798	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein polypeptide F.	0.883
DDX20	SNRPG	ENSACAP00000006167	ENSACAP00000007711	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein G.	0.873
DDX20	STRAP	ENSACAP00000006167	ENSACAP00000014144	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Serine/threonine kinase receptor associated protein.	0.981
GEMIN2	DDX20	ENSACAP00000015604	ENSACAP00000006167	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	0.996
GEMIN2	GEMIN4	ENSACAP00000015604	ENSACAP00000015722	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Gem nuclear organelle associated protein 4.	0.976
GEMIN2	GEMIN5	ENSACAP00000015604	ENSACAP00000003886	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Gem nuclear organelle associated protein 5.	0.959
GEMIN2	GEMIN7	ENSACAP00000015604	ENSACAP00000004144	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Gem nuclear organelle associated protein 7.	0.969
GEMIN2	GEMIN8	ENSACAP00000015604	ENSACAP00000001873	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Gem nuclear organelle associated protein 8.	0.975
GEMIN2	LOC100553231	ENSACAP00000015604	ENSACAP00000009875	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Tudor domain-containing protein.	0.987
GEMIN2	SNRPB	ENSACAP00000015604	ENSACAP00000002014	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Small nuclear ribonucleoprotein-associated protein.	0.721