(5 nodes) SOSS complex network (Anolis carolinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NABP2	Nucleic acid binding protein 2. (215 aa)
	nabp1	OB domain-containing protein. (212 aa)
	LOC103282856	Uncharacterized protein. (158 aa)
	INIP	INTS3 and NABP interacting protein. (124 aa)
	LOC103282695	SOSS complex subunit B2. (111 aa)

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
INIP	LOC103282695	ENSACAP00000017096	ENSACAP00000020902	INTS3 and NABP interacting protein.	SOSS complex subunit B2.	0.683
INIP	LOC103282856	ENSACAP00000017096	ENSACAP00000010970	INTS3 and NABP interacting protein.	Uncharacterized protein.	0.997
INIP	NABP2	ENSACAP00000017096	ENSACAP00000021222	INTS3 and NABP interacting protein.	Nucleic acid binding protein 2.	0.683
INIP	nabp1	ENSACAP00000017096	ENSACAP00000006582	INTS3 and NABP interacting protein.	OB domain-containing protein.	0.683
LOC103282695	INIP	ENSACAP00000020902	ENSACAP00000017096	SOSS complex subunit B2.	INTS3 and NABP interacting protein.	0.683
LOC103282695	LOC103282856	ENSACAP00000020902	ENSACAP00000010970	SOSS complex subunit B2.	Uncharacterized protein.	0.859
LOC103282695	NABP2	ENSACAP00000020902	ENSACAP00000021222	SOSS complex subunit B2.	Nucleic acid binding protein 2.	0.540
LOC103282856	INIP	ENSACAP00000010970	ENSACAP00000017096	Uncharacterized protein.	INTS3 and NABP interacting protein.	0.997
LOC103282856	LOC103282695	ENSACAP00000010970	ENSACAP00000020902	Uncharacterized protein.	SOSS complex subunit B2.	0.859
LOC103282856	NABP2	ENSACAP00000010970	ENSACAP00000021222	Uncharacterized protein.	Nucleic acid binding protein 2.	0.859
LOC103282856	nabp1	ENSACAP00000010970	ENSACAP00000006582	Uncharacterized protein.	OB domain-containing protein.	0.859
NABP2	INIP	ENSACAP00000021222	ENSACAP00000017096	Nucleic acid binding protein 2.	INTS3 and NABP interacting protein.	0.683
NABP2	LOC103282695	ENSACAP00000021222	ENSACAP00000020902	Nucleic acid binding protein 2.	SOSS complex subunit B2.	0.540
NABP2	LOC103282856	ENSACAP00000021222	ENSACAP00000010970	Nucleic acid binding protein 2.	Uncharacterized protein.	0.859
nabp1	INIP	ENSACAP00000006582	ENSACAP00000017096	OB domain-containing protein.	INTS3 and NABP interacting protein.	0.683
nabp1	LOC103282856	ENSACAP00000006582	ENSACAP00000010970	OB domain-containing protein.	Uncharacterized protein.	0.859