(27 nodes) Regulation of autophagosome assembly network (Anolis carolinensis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RAB3GAP1	RAB3 GTPase activating protein catalytic subunit 1. (980 aa)
	TMEM39A	Transmembrane protein 39A. (488 aa)
	SNX30	Sorting nexin family member 30. (441 aa)
	LOC103277519	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (176 aa)
	scfd1	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (631 aa)
	SEC22B	SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family. (215 aa)
	WIPI1	WD repeat domain, phosphoinositide interacting 1. (445 aa)
	PIP4K2B	Phosphatidylinositol-5-phosphate 4-kinase type 2 beta. (422 aa)
	LOC100556109	Uncharacterized protein; Belongs to the synaptobrevin family. (215 aa)
	TMEM39B	Transmembrane protein 39B. (488 aa)
	C9orf72	C9orf72-SMCR8 complex subunit. (481 aa)
	PIKFYVE	Phosphoinositide kinase, FYVE-type zinc finger containing. (2125 aa)
	SMCR8	SMCR8-C9orf72 complex subunit. (932 aa)
	PIP4K2A	Phosphatidylinositol-5-phosphate 4-kinase type 2 alpha. (404 aa)
	LRRK2	Leucine rich repeat kinase 2. (2540 aa)
	LOC100562718	Chorein_N domain-containing protein. (571 aa)
	atg2a	Uncharacterized protein. (706 aa)
	TBC1D12	TBC1 domain family member 12. (312 aa)
	ULK1	Unc-51 like autophagy activating kinase 1. (1031 aa)
	PIP4K2C	Phosphatidylinositol-5-phosphate 4-kinase type 2 gamma. (410 aa)
	IFT88	Intraflagellar transport 88. (820 aa)
	RAB3GAP2	RAB3 GTPase activating non-catalytic protein subunit 2. (1381 aa)
	FEZ2	Fasciculation and elongation protein zeta 2. (181 aa)
	FEZ1	Fasciculation and elongation protein zeta 1. (425 aa)
	SNX7	Sorting nexin 7. (473 aa)
	LRSAM1	Leucine rich repeat and sterile alpha motif containing 1. (720 aa)
	SNX4	Sorting nexin 4. (476 aa)

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C9orf72	SMCR8	ENSACAP00000010554	ENSACAP00000008961	C9orf72-SMCR8 complex subunit.	SMCR8-C9orf72 complex subunit.	0.993
C9orf72	ULK1	ENSACAP00000010554	ENSACAP00000007192	C9orf72-SMCR8 complex subunit.	Unc-51 like autophagy activating kinase 1.	0.953
FEZ2	ULK1	ENSACAP00000001647	ENSACAP00000007192	Fasciculation and elongation protein zeta 2.	Unc-51 like autophagy activating kinase 1.	0.438
LOC100556109	LOC103277519	ENSACAP00000012186	ENSACAP00000015607	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.833
LOC100556109	SEC22B	ENSACAP00000012186	ENSACAP00000013445	Uncharacterized protein; Belongs to the synaptobrevin family.	SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.	0.901
LOC100556109	SNX4	ENSACAP00000012186	ENSACAP00000022499	Uncharacterized protein; Belongs to the synaptobrevin family.	Sorting nexin 4.	0.575
LOC100556109	scfd1	ENSACAP00000012186	ENSACAP00000014540	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.833
LOC100562718	ULK1	ENSACAP00000008033	ENSACAP00000007192	Chorein_N domain-containing protein.	Unc-51 like autophagy activating kinase 1.	0.964
LOC100562718	WIPI1	ENSACAP00000008033	ENSACAP00000013055	Chorein_N domain-containing protein.	WD repeat domain, phosphoinositide interacting 1.	0.970
LOC100562718	atg2a	ENSACAP00000008033	ENSACAP00000018681	Chorein_N domain-containing protein.	Uncharacterized protein.	0.929
LOC103277519	LOC100556109	ENSACAP00000015607	ENSACAP00000012186	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.833
LOC103277519	SEC22B	ENSACAP00000015607	ENSACAP00000013445	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.	0.833
PIKFYVE	PIP4K2A	ENSACAP00000009858	ENSACAP00000008733	Phosphoinositide kinase, FYVE-type zinc finger containing.	Phosphatidylinositol-5-phosphate 4-kinase type 2 alpha.	0.933
PIKFYVE	PIP4K2B	ENSACAP00000009858	ENSACAP00000012961	Phosphoinositide kinase, FYVE-type zinc finger containing.	Phosphatidylinositol-5-phosphate 4-kinase type 2 beta.	0.919
PIKFYVE	PIP4K2C	ENSACAP00000009858	ENSACAP00000007008	Phosphoinositide kinase, FYVE-type zinc finger containing.	Phosphatidylinositol-5-phosphate 4-kinase type 2 gamma.	0.919
PIKFYVE	WIPI1	ENSACAP00000009858	ENSACAP00000013055	Phosphoinositide kinase, FYVE-type zinc finger containing.	WD repeat domain, phosphoinositide interacting 1.	0.507
PIP4K2A	PIKFYVE	ENSACAP00000008733	ENSACAP00000009858	Phosphatidylinositol-5-phosphate 4-kinase type 2 alpha.	Phosphoinositide kinase, FYVE-type zinc finger containing.	0.933
PIP4K2A	PIP4K2B	ENSACAP00000008733	ENSACAP00000012961	Phosphatidylinositol-5-phosphate 4-kinase type 2 alpha.	Phosphatidylinositol-5-phosphate 4-kinase type 2 beta.	0.902
PIP4K2A	PIP4K2C	ENSACAP00000008733	ENSACAP00000007008	Phosphatidylinositol-5-phosphate 4-kinase type 2 alpha.	Phosphatidylinositol-5-phosphate 4-kinase type 2 gamma.	0.901
PIP4K2B	PIKFYVE	ENSACAP00000012961	ENSACAP00000009858	Phosphatidylinositol-5-phosphate 4-kinase type 2 beta.	Phosphoinositide kinase, FYVE-type zinc finger containing.	0.919