11 items (Anolis carolinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	POLR2L	RNA polymerase II subunit L. (67 aa)
	POLR2B	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
	POLR2D	RNA polymerase II subunit D. (142 aa)
	polr2c	RPOLD domain-containing protein. (275 aa)
	POLR2A	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1969 aa)
	POLR2F	RNA polymerase II subunit F. (127 aa)
	POLR2G	RNA polymerase II subunit G. (172 aa)
	POLR2K	RNA polymerase II subunit K. (58 aa)
	H9GUD4_ANOCA	RPOLD domain-containing protein. (210 aa)
	H9GVV6_ANOCA	Uncharacterized protein. (31 aa)
	polr2j	RNA polymerase II subunit J. (117 aa)

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H9GUD4_ANOCA	H9GVV6_ANOCA	ENSACAP00000020640	ENSACAP00000021567	RPOLD domain-containing protein.	Uncharacterized protein.	0.976
H9GUD4_ANOCA	POLR2A	ENSACAP00000020640	ENSACAP00000014487	RPOLD domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.962
H9GUD4_ANOCA	POLR2B	ENSACAP00000020640	ENSACAP00000002204	RPOLD domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.982
H9GUD4_ANOCA	POLR2D	ENSACAP00000020640	ENSACAP00000005129	RPOLD domain-containing protein.	RNA polymerase II subunit D.	0.965
H9GUD4_ANOCA	POLR2F	ENSACAP00000020640	ENSACAP00000015030	RPOLD domain-containing protein.	RNA polymerase II subunit F.	0.989
H9GUD4_ANOCA	POLR2G	ENSACAP00000020640	ENSACAP00000000941	RPOLD domain-containing protein.	RNA polymerase II subunit G.	0.967
H9GUD4_ANOCA	POLR2K	ENSACAP00000020640	ENSACAP00000017962	RPOLD domain-containing protein.	RNA polymerase II subunit K.	0.966
H9GUD4_ANOCA	POLR2L	ENSACAP00000020640	ENSACAP00000015241	RPOLD domain-containing protein.	RNA polymerase II subunit L.	0.983
H9GUD4_ANOCA	polr2j	ENSACAP00000020640	ENSACAP00000000232	RPOLD domain-containing protein.	RNA polymerase II subunit J.	0.969
H9GVV6_ANOCA	H9GUD4_ANOCA	ENSACAP00000021567	ENSACAP00000020640	Uncharacterized protein.	RPOLD domain-containing protein.	0.976
H9GVV6_ANOCA	POLR2A	ENSACAP00000021567	ENSACAP00000014487	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.965
H9GVV6_ANOCA	POLR2B	ENSACAP00000021567	ENSACAP00000002204	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
H9GVV6_ANOCA	POLR2D	ENSACAP00000021567	ENSACAP00000005129	Uncharacterized protein.	RNA polymerase II subunit D.	0.999
H9GVV6_ANOCA	POLR2F	ENSACAP00000021567	ENSACAP00000015030	Uncharacterized protein.	RNA polymerase II subunit F.	0.999
H9GVV6_ANOCA	POLR2G	ENSACAP00000021567	ENSACAP00000000941	Uncharacterized protein.	RNA polymerase II subunit G.	0.999
H9GVV6_ANOCA	POLR2K	ENSACAP00000021567	ENSACAP00000017962	Uncharacterized protein.	RNA polymerase II subunit K.	0.999
H9GVV6_ANOCA	POLR2L	ENSACAP00000021567	ENSACAP00000015241	Uncharacterized protein.	RNA polymerase II subunit L.	0.999
H9GVV6_ANOCA	polr2c	ENSACAP00000021567	ENSACAP00000007391	Uncharacterized protein.	RPOLD domain-containing protein.	0.976
H9GVV6_ANOCA	polr2j	ENSACAP00000021567	ENSACAP00000000232	Uncharacterized protein.	RNA polymerase II subunit J.	0.999
POLR2A	H9GUD4_ANOCA	ENSACAP00000014487	ENSACAP00000020640	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.962