(15 nodes) Intraciliary transport particle B network (Anolis carolinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	IFT81	Intraflagellar transport 81. (676 aa)
	IFT27	Intraflagellar transport 27. (186 aa)
	IFT22	Intraflagellar transport 22. (186 aa)
	ttc30a	Uncharacterized protein. (676 aa)
	TRAF3IP1	TRAF3 interacting protein 1. (676 aa)
	IFT80	Intraflagellar transport 80. (778 aa)
	IFT46	Intraflagellar transport 46. (365 aa)
	IFT172	Uncharacterized protein. (955 aa)
	TTC26	Tetratricopeptide repeat domain 26. (555 aa)
	IFT52	Intraflagellar transport 52. (517 aa)
	H9G581_ANOCA	Uncharacterized protein. (227 aa)
	HSPB11	Heat shock protein family B (small) member 11. (138 aa)
	IFT74	Intraflagellar transport 74. (352 aa)
	IFT57	Intraflagellar transport 57. (275 aa)
	H9GQS2_ANOCA	Uncharacterized protein. (134 aa)

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H9G581_ANOCA	H9GQS2_ANOCA	ENSACAP00000001436	ENSACAP00000018367	Uncharacterized protein.	Uncharacterized protein.	0.899
H9G581_ANOCA	HSPB11	ENSACAP00000001436	ENSACAP00000023055	Uncharacterized protein.	Heat shock protein family B (small) member 11.	0.749
H9G581_ANOCA	IFT172	ENSACAP00000001436	ENSACAP00000006683	Uncharacterized protein.	Uncharacterized protein.	0.919
H9G581_ANOCA	IFT22	ENSACAP00000001436	ENSACAP00000015065	Uncharacterized protein.	Intraflagellar transport 22.	0.867
H9G581_ANOCA	IFT27	ENSACAP00000001436	ENSACAP00000015992	Uncharacterized protein.	Intraflagellar transport 27.	0.812
H9G581_ANOCA	IFT46	ENSACAP00000001436	ENSACAP00000006847	Uncharacterized protein.	Intraflagellar transport 46.	0.950
H9G581_ANOCA	IFT52	ENSACAP00000001436	ENSACAP00000002342	Uncharacterized protein.	Intraflagellar transport 52.	0.969
H9G581_ANOCA	IFT57	ENSACAP00000001436	ENSACAP00000019146	Uncharacterized protein.	Intraflagellar transport 57.	0.973
H9G581_ANOCA	IFT74	ENSACAP00000001436	ENSACAP00000022047	Uncharacterized protein.	Intraflagellar transport 74.	0.891
H9G581_ANOCA	IFT80	ENSACAP00000001436	ENSACAP00000006906	Uncharacterized protein.	Intraflagellar transport 80.	0.974
H9G581_ANOCA	IFT81	ENSACAP00000001436	ENSACAP00000016000	Uncharacterized protein.	Intraflagellar transport 81.	0.957
H9G581_ANOCA	TRAF3IP1	ENSACAP00000001436	ENSACAP00000009543	Uncharacterized protein.	TRAF3 interacting protein 1.	0.968
H9G581_ANOCA	TTC26	ENSACAP00000001436	ENSACAP00000003298	Uncharacterized protein.	Tetratricopeptide repeat domain 26.	0.957
H9G581_ANOCA	ttc30a	ENSACAP00000001436	ENSACAP00000011902	Uncharacterized protein.	Uncharacterized protein.	0.967
H9GQS2_ANOCA	H9G581_ANOCA	ENSACAP00000018367	ENSACAP00000001436	Uncharacterized protein.	Uncharacterized protein.	0.899
H9GQS2_ANOCA	HSPB11	ENSACAP00000018367	ENSACAP00000023055	Uncharacterized protein.	Heat shock protein family B (small) member 11.	0.749
H9GQS2_ANOCA	IFT172	ENSACAP00000018367	ENSACAP00000006683	Uncharacterized protein.	Uncharacterized protein.	0.832
H9GQS2_ANOCA	IFT22	ENSACAP00000018367	ENSACAP00000015065	Uncharacterized protein.	Intraflagellar transport 22.	0.801
H9GQS2_ANOCA	IFT27	ENSACAP00000018367	ENSACAP00000015992	Uncharacterized protein.	Intraflagellar transport 27.	0.812
H9GQS2_ANOCA	IFT46	ENSACAP00000018367	ENSACAP00000006847	Uncharacterized protein.	Intraflagellar transport 46.	0.873