(34 nodes) Chromo domain network (Anolis carolinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R4GBX7_ANOCA	Uncharacterized protein. (788 aa)
	R4GBJ6_ANOCA	Uncharacterized protein. (517 aa)
	R4GBJ2_ANOCA	Uncharacterized protein. (835 aa)
	R4GB13_ANOCA	Uncharacterized protein. (397 aa)
	R4GAN3_ANOCA	Uncharacterized protein. (404 aa)
	R4GA70_ANOCA	Uncharacterized protein. (926 aa)
	chd2	Uncharacterized protein. (1838 aa)
	CHD6	Chromodomain helicase DNA binding protein 6. (2717 aa)
	CBX1	Chromobox 1. (189 aa)
	R4G9W5_ANOCA	Integrase catalytic domain-containing protein. (640 aa)
	R4GA05_ANOCA	Integrase catalytic domain-containing protein. (328 aa)
	CBX6	Chromobox 6. (683 aa)
	CDYL2	Chromodomain Y like 2. (507 aa)
	CHD1	Chromodomain helicase DNA binding protein 1. (1803 aa)
	CBX7	Chromobox 7. (248 aa)
	R4GDH2_ANOCA	Uncharacterized protein. (370 aa)
	R4GCR2_ANOCA	Uncharacterized protein. (876 aa)
	CBX3	Chromobox 3. (184 aa)
	SUV39H1	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily. (414 aa)
	CHD7	Chromodomain helicase DNA binding protein 7. (2978 aa)
	CHD3	Chromodomain helicase DNA binding protein 3. (2052 aa)
	CHD8	Chromodomain helicase DNA binding protein 8. (2480 aa)
	CHD5	Chromodomain helicase DNA binding protein 5. (1962 aa)
	R4G9U9_ANOCA	Integrase catalytic domain-containing protein. (598 aa)
	CBX2	Chromobox 2. (551 aa)
	R4G9E5_ANOCA	Uncharacterized protein. (346 aa)
	R4G9S7_ANOCA	Uncharacterized protein. (382 aa)
	R4G9U6_ANOCA	Uncharacterized protein. (471 aa)
	R4GDK0_ANOCA	Uncharacterized protein. (369 aa)
	R4GCZ2_ANOCA	Uncharacterized protein. (890 aa)
	LOC100556061	Chromo domain-containing protein. (540 aa)
	CBX5	Chromobox 5. (188 aa)
	chd4	Uncharacterized protein. (1927 aa)
	CHD9	Chromodomain helicase DNA binding protein 9. (2918 aa)

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBX1	CBX3	ENSACAP00000006455	ENSACAP00000012734	Chromobox 1.	Chromobox 3.	0.585
CBX1	CHD3	ENSACAP00000006455	ENSACAP00000004315	Chromobox 1.	Chromodomain helicase DNA binding protein 3.	0.510
CBX1	CHD5	ENSACAP00000006455	ENSACAP00000002593	Chromobox 1.	Chromodomain helicase DNA binding protein 5.	0.510
CBX1	SUV39H1	ENSACAP00000006455	ENSACAP00000006187	Chromobox 1.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.846
CBX1	chd4	ENSACAP00000006455	ENSACAP00000006236	Chromobox 1.	Uncharacterized protein.	0.658
CBX2	CBX6	ENSACAP00000020251	ENSACAP00000007710	Chromobox 2.	Chromobox 6.	0.583
CBX2	CBX7	ENSACAP00000020251	ENSACAP00000007637	Chromobox 2.	Chromobox 7.	0.767
CBX3	CBX1	ENSACAP00000012734	ENSACAP00000006455	Chromobox 3.	Chromobox 1.	0.585
CBX3	CBX5	ENSACAP00000012734	ENSACAP00000013153	Chromobox 3.	Chromobox 5.	0.586
CBX3	CDYL2	ENSACAP00000012734	ENSACAP00000008652	Chromobox 3.	Chromodomain Y like 2.	0.407
CBX3	CHD3	ENSACAP00000012734	ENSACAP00000004315	Chromobox 3.	Chromodomain helicase DNA binding protein 3.	0.528
CBX3	CHD5	ENSACAP00000012734	ENSACAP00000002593	Chromobox 3.	Chromodomain helicase DNA binding protein 5.	0.528
CBX3	SUV39H1	ENSACAP00000012734	ENSACAP00000006187	Chromobox 3.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.870
CBX3	chd4	ENSACAP00000012734	ENSACAP00000006236	Chromobox 3.	Uncharacterized protein.	0.528
CBX5	CBX3	ENSACAP00000013153	ENSACAP00000012734	Chromobox 5.	Chromobox 3.	0.586
CBX5	CHD3	ENSACAP00000013153	ENSACAP00000004315	Chromobox 5.	Chromodomain helicase DNA binding protein 3.	0.510
CBX5	CHD5	ENSACAP00000013153	ENSACAP00000002593	Chromobox 5.	Chromodomain helicase DNA binding protein 5.	0.510
CBX5	SUV39H1	ENSACAP00000013153	ENSACAP00000006187	Chromobox 5.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.846
CBX5	chd4	ENSACAP00000013153	ENSACAP00000006236	Chromobox 5.	Uncharacterized protein.	0.510
CBX6	CBX2	ENSACAP00000007710	ENSACAP00000020251	Chromobox 6.	Chromobox 2.	0.583