(6 nodes) FF domain superfamily network (Anolis carolinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCERG1	Transcription elongation regulator 1. (522 aa)
	PRPF40A	Pre-mRNA processing factor 40 homolog A. (999 aa)
	ARHGAP5	Rho GTPase activating protein 5. (1505 aa)
	TCERG1L	Transcription elongation regulator 1 like. (612 aa)
	PRPF40B	Pre-mRNA processing factor 40 homolog B. (875 aa)
	ARHGAP35	Rho GTPase activating protein 35. (1504 aa)

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARHGAP35	ARHGAP5	ENSACAP00000011409	ENSACAP00000002689	Rho GTPase activating protein 35.	Rho GTPase activating protein 5.	0.900
ARHGAP5	ARHGAP35	ENSACAP00000002689	ENSACAP00000011409	Rho GTPase activating protein 5.	Rho GTPase activating protein 35.	0.900
PRPF40A	PRPF40B	ENSACAP00000012727	ENSACAP00000008916	Pre-mRNA processing factor 40 homolog A.	Pre-mRNA processing factor 40 homolog B.	0.556
PRPF40A	TCERG1	ENSACAP00000012727	ENSACAP00000013971	Pre-mRNA processing factor 40 homolog A.	Transcription elongation regulator 1.	0.704
PRPF40A	TCERG1L	ENSACAP00000012727	ENSACAP00000007957	Pre-mRNA processing factor 40 homolog A.	Transcription elongation regulator 1 like.	0.661
PRPF40B	PRPF40A	ENSACAP00000008916	ENSACAP00000012727	Pre-mRNA processing factor 40 homolog B.	Pre-mRNA processing factor 40 homolog A.	0.556
TCERG1	PRPF40A	ENSACAP00000013971	ENSACAP00000012727	Transcription elongation regulator 1.	Pre-mRNA processing factor 40 homolog A.	0.704
TCERG1L	PRPF40A	ENSACAP00000007957	ENSACAP00000012727	Transcription elongation regulator 1 like.	Pre-mRNA processing factor 40 homolog A.	0.661