(4 nodes) Est1/Ebs1-like network (Anolis carolinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMG6	Uncharacterized protein. (1160 aa)
	smg5	Uncharacterized protein. (383 aa)
	SMG7	SMG7 nonsense mediated mRNA decay factor. (1193 aa)
	LOC100551781	EST1_DNA_bind domain-containing protein. (484 aa)

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100551781	SMG6	ENSACAP00000008952	ENSACAP00000011592	EST1_DNA_bind domain-containing protein.	Uncharacterized protein.	0.873
LOC100551781	SMG7	ENSACAP00000008952	ENSACAP00000014777	EST1_DNA_bind domain-containing protein.	SMG7 nonsense mediated mRNA decay factor.	0.919
LOC100551781	smg5	ENSACAP00000008952	ENSACAP00000015720	EST1_DNA_bind domain-containing protein.	Uncharacterized protein.	0.907
SMG6	LOC100551781	ENSACAP00000011592	ENSACAP00000008952	Uncharacterized protein.	EST1_DNA_bind domain-containing protein.	0.873
SMG6	SMG7	ENSACAP00000011592	ENSACAP00000014777	Uncharacterized protein.	SMG7 nonsense mediated mRNA decay factor.	0.893
SMG6	smg5	ENSACAP00000011592	ENSACAP00000015720	Uncharacterized protein.	Uncharacterized protein.	0.913
SMG7	LOC100551781	ENSACAP00000014777	ENSACAP00000008952	SMG7 nonsense mediated mRNA decay factor.	EST1_DNA_bind domain-containing protein.	0.919
SMG7	SMG6	ENSACAP00000014777	ENSACAP00000011592	SMG7 nonsense mediated mRNA decay factor.	Uncharacterized protein.	0.893
SMG7	smg5	ENSACAP00000014777	ENSACAP00000015720	SMG7 nonsense mediated mRNA decay factor.	Uncharacterized protein.	0.940
smg5	LOC100551781	ENSACAP00000015720	ENSACAP00000008952	Uncharacterized protein.	EST1_DNA_bind domain-containing protein.	0.907
smg5	SMG6	ENSACAP00000015720	ENSACAP00000011592	Uncharacterized protein.	Uncharacterized protein.	0.913
smg5	SMG7	ENSACAP00000015720	ENSACAP00000014777	Uncharacterized protein.	SMG7 nonsense mediated mRNA decay factor.	0.940