33 items (Anolis carolinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LAMB2	Laminin subunit beta 2. (1774 aa)
	APP	Amyloid beta precursor protein. (776 aa)
	TNR	Tenascin R. (1360 aa)
	TNN	Tenascin N. (918 aa)
	FN1	Fibronectin 1. (2444 aa)
	ITGA8	Integrin subunit alpha 8; Belongs to the integrin alpha chain family. (1083 aa)
	itgb3	Integrin beta; Belongs to the integrin beta chain family. (585 aa)
	NCAN	Neurocan. (1278 aa)
	H9GU38_ANOCA	Uncharacterized protein. (164 aa)
	LOC103282294	Uncharacterized protein. (424 aa)
	G1KYZ5_ANOCA	Uncharacterized protein. (527 aa)
	MUSK	Muscle associated receptor tyrosine kinase. (950 aa)
	SERPINE1	Serpin family E member 1; Belongs to the serpin family. (308 aa)
	agrn	Uncharacterized protein. (221 aa)
	AGRN	Agrin. (1515 aa)
	ITGAV	Integrin subunit alpha V; Belongs to the integrin alpha chain family. (1041 aa)
	TNC	Tenascin C. (1034 aa)
	LOC100557189	Uncharacterized protein. (154 aa)
	LAMB1	Laminin subunit beta 1. (1755 aa)
	COL6A1	Collagen type VI alpha 1 chain. (1012 aa)
	BCAN	Brevican. (1179 aa)
	itga9	Integrin subunit alpha 9; Belongs to the integrin alpha chain family. (1029 aa)
	SPARC	Secreted protein acidic and cysteine rich. (298 aa)
	ITGB5	Integrin beta; Belongs to the integrin beta chain family. (811 aa)
	VCAN	Versican. (3456 aa)
	HAPLN1	Hyaluronan and proteoglycan link protein 1. (353 aa)
	vtn	SMB domain-containing protein. (449 aa)
	ITGB6	Integrin beta; Belongs to the integrin beta chain family. (788 aa)
	MATN4	Matrilin 4. (622 aa)
	DCN	Decorin; May affect the rate of fibrils formation. (357 aa)
	ITGA2B	Integrin subunit alpha 2b; Belongs to the integrin alpha chain family. (980 aa)
	LOC103282426	Uncharacterized protein. (482 aa)
	H9GJW7_ANOCA	Uncharacterized protein. (2163 aa)

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGRN	BCAN	ENSACAP00000001759	ENSACAP00000004819	Agrin.	Brevican.	0.642
AGRN	DCN	ENSACAP00000001759	ENSACAP00000012156	Agrin.	Decorin; May affect the rate of fibrils formation.	0.563
AGRN	FN1	ENSACAP00000001759	ENSACAP00000015631	Agrin.	Fibronectin 1.	0.672
AGRN	LOC103282294	ENSACAP00000001759	ENSACAP00000021151	Agrin.	Uncharacterized protein.	0.574
AGRN	LOC103282426	ENSACAP00000001759	ENSACAP00000012390	Agrin.	Uncharacterized protein.	0.523
AGRN	MUSK	ENSACAP00000001759	ENSACAP00000001049	Agrin.	Muscle associated receptor tyrosine kinase.	0.903
AGRN	SPARC	ENSACAP00000001759	ENSACAP00000009740	Agrin.	Secreted protein acidic and cysteine rich.	0.472
AGRN	VCAN	ENSACAP00000001759	ENSACAP00000011156	Agrin.	Versican.	0.420
AGRN	agrn	ENSACAP00000001759	ENSACAP00000001523	Agrin.	Uncharacterized protein.	0.900
BCAN	AGRN	ENSACAP00000004819	ENSACAP00000001759	Brevican.	Agrin.	0.642
BCAN	DCN	ENSACAP00000004819	ENSACAP00000012156	Brevican.	Decorin; May affect the rate of fibrils formation.	0.611
BCAN	H9GJW7_ANOCA	ENSACAP00000004819	ENSACAP00000013182	Brevican.	Uncharacterized protein.	0.572
BCAN	H9GU38_ANOCA	ENSACAP00000004819	ENSACAP00000020476	Brevican.	Uncharacterized protein.	0.572
BCAN	LOC100557189	ENSACAP00000004819	ENSACAP00000004323	Brevican.	Uncharacterized protein.	0.591
BCAN	NCAN	ENSACAP00000004819	ENSACAP00000017498	Brevican.	Neurocan.	0.718
BCAN	TNC	ENSACAP00000004819	ENSACAP00000003647	Brevican.	Tenascin C.	0.591
BCAN	TNN	ENSACAP00000004819	ENSACAP00000014790	Brevican.	Tenascin N.	0.623
BCAN	TNR	ENSACAP00000004819	ENSACAP00000014743	Brevican.	Tenascin R.	0.653
BCAN	VCAN	ENSACAP00000004819	ENSACAP00000011156	Brevican.	Versican.	0.789
BCAN	agrn	ENSACAP00000004819	ENSACAP00000001523	Brevican.	Uncharacterized protein.	0.549