45 items (Anolis carolinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KAT2B	Lysine acetyltransferase 2B. (617 aa)
	LOC103281873	Uncharacterized protein. (309 aa)
	LOC100557254	Histone H2B; Belongs to the histone H2B family. (126 aa)
	ENSACAP00000019109	annotation not available (103 aa)
	ENSACAP00000019009	annotation not available (103 aa)
	LOC100556861	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103282265	Uncharacterized protein. (414 aa)
	POLR2K	RNA polymerase II subunit K. (58 aa)
	LOC100559083	Histone H4. (103 aa)
	KAT2A	Lysine acetyltransferase 2A. (853 aa)
	POLR2L	RNA polymerase II subunit L. (67 aa)
	ENSACAP00000015206	annotation not available (103 aa)
	LOC100558489	Histone H4. (103 aa)
	LOC100558030	Histone H4. (103 aa)
	LOC100557833	Histone H2B; Belongs to the histone H2B family. (126 aa)
	POLR2F	RNA polymerase II subunit F. (127 aa)
	LOC100557042	Histone H2B; Belongs to the histone H2B family. (126 aa)
	taf1d	Uncharacterized protein. (196 aa)
	H2AZ1	Histone H2A; Belongs to the histone H2A family. (128 aa)
	POLR1A	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1704 aa)
	TWISTNB	TWIST neighbor. (197 aa)
	ERCC6	ERCC excision repair 6, chromatin remodeling factor. (1440 aa)
	SMARCA1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1. (1049 aa)
	ZNRD1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (120 aa)
	H9GHE9_ANOCA	TH1 domain-containing protein. (193 aa)
	DDX21	DExD-box helicase 21. (791 aa)
	POLR1C	RNA polymerase I and III subunit C. (348 aa)
	SF3B1	Splicing factor 3b subunit 1. (1302 aa)
	myo1h	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (323 aa)
	LOC100563266	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (691 aa)
	H2AZ2	Histone H2A; Belongs to the histone H2A family. (128 aa)
	LOC100560345	Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (587 aa)
	EP300	E1A binding protein p300. (2484 aa)
	LOC100553870	Histone H4. (103 aa)
	HIST1H4J	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	baz1b	WSD domain-containing protein. (105 aa)
	GSK3B	Glycogen synthase kinase 3 beta; Belongs to the protein kinase superfamily. (432 aa)
	gsk3a	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (388 aa)
	DEK	DEK proto-oncogene. (380 aa)
	SMARCA5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5. (1036 aa)
	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	tbp	Uncharacterized protein. (300 aa)
	TAF1A	TATA-box binding protein associated factor, RNA polymerase I subunit A. (439 aa)
	MYBBP1A	MYB binding protein 1a. (1167 aa)
	TAF1B	TATA-box binding protein associated factor, RNA polymerase I subunit B. (660 aa)

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX21	DEK	ENSACAP00000009711	ENSACAP00000003164	DExD-box helicase 21.	DEK proto-oncogene.	0.746
DDX21	EP300	ENSACAP00000009711	ENSACAP00000005074	DExD-box helicase 21.	E1A binding protein p300.	0.613
DDX21	ERCC6	ENSACAP00000009711	ENSACAP00000011492	DExD-box helicase 21.	ERCC excision repair 6, chromatin remodeling factor.	0.783
DDX21	GSK3B	ENSACAP00000009711	ENSACAP00000003624	DExD-box helicase 21.	Glycogen synthase kinase 3 beta; Belongs to the protein kinase superfamily.	0.430
DDX21	H2AZ1	ENSACAP00000009711	ENSACAP00000012277	DExD-box helicase 21.	Histone H2A; Belongs to the histone H2A family.	0.441
DDX21	H2AZ2	ENSACAP00000009711	ENSACAP00000005903	DExD-box helicase 21.	Histone H2A; Belongs to the histone H2A family.	0.441
DDX21	H9GHE9_ANOCA	ENSACAP00000009711	ENSACAP00000011077	DExD-box helicase 21.	TH1 domain-containing protein.	0.581
DDX21	KAT2A	ENSACAP00000009711	ENSACAP00000017686	DExD-box helicase 21.	Lysine acetyltransferase 2A.	0.483
DDX21	KAT2B	ENSACAP00000009711	ENSACAP00000000014	DExD-box helicase 21.	Lysine acetyltransferase 2B.	0.483
DDX21	LOC100560345	ENSACAP00000009711	ENSACAP00000005636	DExD-box helicase 21.	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	0.668
DDX21	LOC100563266	ENSACAP00000009711	ENSACAP00000006993	DExD-box helicase 21.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.668
DDX21	LOC103281873	ENSACAP00000009711	ENSACAP00000022663	DExD-box helicase 21.	Uncharacterized protein.	0.456
DDX21	LOC103282265	ENSACAP00000009711	ENSACAP00000018360	DExD-box helicase 21.	Uncharacterized protein.	0.456
DDX21	MYBBP1A	ENSACAP00000009711	ENSACAP00000000497	DExD-box helicase 21.	MYB binding protein 1a.	0.818
DDX21	POLR1A	ENSACAP00000009711	ENSACAP00000012126	DExD-box helicase 21.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.745
DDX21	POLR1C	ENSACAP00000009711	ENSACAP00000009594	DExD-box helicase 21.	RNA polymerase I and III subunit C.	0.691
DDX21	POLR2F	ENSACAP00000009711	ENSACAP00000015030	DExD-box helicase 21.	RNA polymerase II subunit F.	0.619
DDX21	POLR2H	ENSACAP00000009711	ENSACAP00000002728	DExD-box helicase 21.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.618
DDX21	POLR2K	ENSACAP00000009711	ENSACAP00000017962	DExD-box helicase 21.	RNA polymerase II subunit K.	0.589
DDX21	POLR2L	ENSACAP00000009711	ENSACAP00000015241	DExD-box helicase 21.	RNA polymerase II subunit L.	0.553