62 items (Anolis carolinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100556472	Histone H2B; Belongs to the histone H2B family. (126 aa)
	CHD5	Chromodomain helicase DNA binding protein 5. (1962 aa)
	tbp	Uncharacterized protein. (300 aa)
	TAF1A	TATA-box binding protein associated factor, RNA polymerase I subunit A. (439 aa)
	DMTF1	Cyclin D binding myb like transcription factor 1. (764 aa)
	tbpl2	Uncharacterized protein. (192 aa)
	MTA2	Metastasis associated 1 family member 2. (700 aa)
	CCNH	Cyclin H; Belongs to the cyclin family. (318 aa)
	TBPL1	TATA-box binding protein like 1. (186 aa)
	TAF1B	TATA-box binding protein associated factor, RNA polymerase I subunit B. (660 aa)
	GTF2H1	General transcription factor IIH subunit 1. (571 aa)
	POLR1A	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1704 aa)
	TWISTNB	TWIST neighbor. (197 aa)
	ERCC6	ERCC excision repair 6, chromatin remodeling factor. (1440 aa)
	ZNRD1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (120 aa)
	GTF2H4	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (460 aa)
	LOC100558064	General transcription factor IIH subunit. (392 aa)
	ERCC3	ERCC excision repair 3, TFIIH core complex helicase subunit. (719 aa)
	POLR1C	RNA polymerase I and III subunit C. (348 aa)
	GATAD2B	GATA zinc finger domain containing 2B. (594 aa)
	mbd2	Methyl-CpG binding domain protein 2. (270 aa)
	LOC103281513	SprT-like domain-containing protein. (315 aa)
	LOC100563266	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (691 aa)
	MNAT1	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)
	chd4	Uncharacterized protein. (1927 aa)
	H2AZ2	Histone H2A; Belongs to the histone H2A family. (128 aa)
	LOC100560345	Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (587 aa)
	GTF2H5	General transcription factor IIH subunit 5. (71 aa)
	LOC100553870	Histone H4. (103 aa)
	CHD3	Chromodomain helicase DNA binding protein 3. (2052 aa)
	LOC100553081	Histone H2B 5-like. (126 aa)
	HIST1H4J	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	LOC100552683	Histone H2B; Belongs to the histone H2B family. (126 aa)
	RRN3	RRN3 homolog, RNA polymerase I transcription factor. (611 aa)
	rbbp4	RB binding protein 4, chromatin remodeling factor. (435 aa)
	LOC100556079	Histone H2B; Belongs to the histone H2B family. (126 aa)
	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	LOC103281873	Uncharacterized protein. (309 aa)
	H9GVV6_ANOCA	Uncharacterized protein. (31 aa)
	LOC100557254	Histone H2B; Belongs to the histone H2B family. (126 aa)
	Aire	HSR domain-containing protein. (62 aa)
	ENSACAP00000019109	annotation not available (103 aa)
	ENSACAP00000019009	annotation not available (103 aa)
	LOC100556861	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103282265	Uncharacterized protein. (414 aa)
	POLR2K	RNA polymerase II subunit K. (58 aa)
	LOC100559083	Histone H4. (103 aa)
	ubtf	Uncharacterized protein. (760 aa)
	CDK7	Cyclin dependent kinase 7; Belongs to the protein kinase superfamily. (345 aa)
	POLR2L	RNA polymerase II subunit L. (67 aa)
	ENSACAP00000015206	annotation not available (103 aa)
	LOC100558489	Histone H4. (103 aa)
	LOC100558030	Histone H4. (103 aa)
	LOC100557833	Histone H2B; Belongs to the histone H2B family. (126 aa)
	POLR2F	RNA polymerase II subunit F. (127 aa)
	LOC100557042	Histone H2B; Belongs to the histone H2B family. (126 aa)
	GTF2H3	General transcription factor IIH subunit 3. (311 aa)
	MTA3	Metastasis associated 1 family member 3. (662 aa)
	taf1d	Uncharacterized protein. (196 aa)
	MTA1	Metastasis associated 1. (694 aa)
	CBX3	Chromobox 3. (184 aa)
	H2AZ1	Histone H2A; Belongs to the histone H2A family. (128 aa)

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Aire	CBX3	ENSACAP00000021260	ENSACAP00000012734	HSR domain-containing protein.	Chromobox 3.	0.510
Aire	ERCC6	ENSACAP00000021260	ENSACAP00000011492	HSR domain-containing protein.	ERCC excision repair 6, chromatin remodeling factor.	0.416
Aire	GATAD2B	ENSACAP00000021260	ENSACAP00000008646	HSR domain-containing protein.	GATA zinc finger domain containing 2B.	0.790
Aire	H2AZ1	ENSACAP00000021260	ENSACAP00000012277	HSR domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.404
Aire	H2AZ2	ENSACAP00000021260	ENSACAP00000005903	HSR domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.404
Aire	H9GVV6_ANOCA	ENSACAP00000021260	ENSACAP00000021567	HSR domain-containing protein.	Uncharacterized protein.	0.413
Aire	MTA1	ENSACAP00000021260	ENSACAP00000013368	HSR domain-containing protein.	Metastasis associated 1.	0.649
Aire	MTA2	ENSACAP00000021260	ENSACAP00000000710	HSR domain-containing protein.	Metastasis associated 1 family member 2.	0.649
Aire	MTA3	ENSACAP00000021260	ENSACAP00000014395	HSR domain-containing protein.	Metastasis associated 1 family member 3.	0.649
Aire	POLR2F	ENSACAP00000021260	ENSACAP00000015030	HSR domain-containing protein.	RNA polymerase II subunit F.	0.528
Aire	mbd2	ENSACAP00000021260	ENSACAP00000008553	HSR domain-containing protein.	Methyl-CpG binding domain protein 2.	0.781
Aire	rbbp4	ENSACAP00000021260	ENSACAP00000003318	HSR domain-containing protein.	RB binding protein 4, chromatin remodeling factor.	0.865
Aire	ubtf	ENSACAP00000021260	ENSACAP00000016948	HSR domain-containing protein.	Uncharacterized protein.	0.442
CBX3	Aire	ENSACAP00000012734	ENSACAP00000021260	Chromobox 3.	HSR domain-containing protein.	0.510
CBX3	CHD3	ENSACAP00000012734	ENSACAP00000004315	Chromobox 3.	Chromodomain helicase DNA binding protein 3.	0.528
CBX3	CHD5	ENSACAP00000012734	ENSACAP00000002593	Chromobox 3.	Chromodomain helicase DNA binding protein 5.	0.528
CBX3	ENSACAP00000015206	ENSACAP00000012734	ENSACAP00000015206	Chromobox 3.	annotation not available	0.435
CBX3	ENSACAP00000019009	ENSACAP00000012734	ENSACAP00000019009	Chromobox 3.	annotation not available	0.435
CBX3	ENSACAP00000019109	ENSACAP00000012734	ENSACAP00000019109	Chromobox 3.	annotation not available	0.435
CBX3	H2AZ1	ENSACAP00000012734	ENSACAP00000012277	Chromobox 3.	Histone H2A; Belongs to the histone H2A family.	0.585