STRINGSTRING
SRSF9 SRSF9 CASC3 CASC3 SRSF6 SRSF6 SNRPB SNRPB CPSF3 CPSF3 CPSF6 CPSF6 u2af1 u2af1 SRRM1 SRRM1 LOC103281839 LOC103281839 H9GTZ8_ANOCA H9GTZ8_ANOCA LOC103279065 LOC103279065 zc3h11a zc3h11a THOC7 THOC7 LOC100556404 LOC100556404 PCF11 PCF11 LSM10 LSM10 LOC100565809 LOC100565809 NUDT21 NUDT21 CLP1 CLP1 Slbp Slbp thoc3 thoc3 pabpn1 pabpn1 SRSF7 SRSF7 srsf1 srsf1 WDR33 WDR33 SRSF5 SRSF5 NCBP1 NCBP1 SYMPK SYMPK RNPS1 RNPS1 POLDIP3 POLDIP3 SNRPD3 SNRPD3 Lsm11 Lsm11 SLU7 SLU7 CSTF3 CSTF3 TPRG1 TPRG1 FYTTD1 FYTTD1 SNRPG SNRPG DHX38 DHX38 THOC1 THOC1 MAGOH MAGOH THOC5 THOC5 CPSF2 CPSF2 ZNF318 ZNF318 CPSF1 CPSF1 SNRPE SNRPE THOC6 THOC6 ALYREF ALYREF fip1l1 fip1l1 DDX39A DDX39A CDC40 CDC40 C12orf50 C12orf50 CHTOP CHTOP THOC2 THOC2 DDX39B DDX39B CPSF4 CPSF4 PABPN1L PABPN1L Wdr25 Wdr25 PAPOLA PAPOLA SRSF11 SRSF11 SNRPF SNRPF EIF4A3 EIF4A3 LOC100565538 LOC100565538 SARNP SARNP U2AF2 U2AF2 CSTF1 CSTF1 zc3h13 zc3h13 SRSF3 SRSF3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SRSF9Serine and arginine rich splicing factor 9. (245 aa)
CASC3CASC3 exon junction complex subunit. (723 aa)
SRSF6Serine and arginine rich splicing factor 6. (349 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (232 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (636 aa)
CPSF6Cleavage and polyadenylation specific factor 6. (541 aa)
u2af1Uncharacterized protein. (242 aa)
SRRM1Serine and arginine repetitive matrix 1. (901 aa)
LOC103281839Uncharacterized protein. (134 aa)
H9GTZ8_ANOCAC3H1-type domain-containing protein. (167 aa)
LOC103279065WD_REPEATS_REGION domain-containing protein. (159 aa)
zc3h11aUncharacterized protein. (781 aa)
THOC7THO complex 7. (212 aa)
LOC100556404Uncharacterized protein. (261 aa)
PCF11PCF11 cleavage and polyadenylation factor subunit. (1482 aa)
LSM10LSM10, U7 small nuclear RNA associated. (123 aa)
LOC100565809ANK_REP_REGION domain-containing protein. (272 aa)
NUDT21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (227 aa)
CLP1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (425 aa)
SlbpSLBP_RNA_bind domain-containing protein. (75 aa)
thoc3WD_REPEATS_REGION domain-containing protein. (222 aa)
pabpn1RRM domain-containing protein. (282 aa)
SRSF7Serine and arginine rich splicing factor 7. (235 aa)
srsf1Uncharacterized protein. (247 aa)
WDR33WD repeat domain 33. (1309 aa)
SRSF5Serine and arginine rich splicing factor 5. (267 aa)
NCBP1Nuclear cap binding protein subunit 1. (918 aa)
SYMPKSymplekin. (1191 aa)
RNPS1RNA binding protein with serine rich domain 1. (245 aa)
POLDIP3DNA polymerase delta interacting protein 3. (429 aa)
SNRPD3Small nuclear ribonucleoprotein D3 polypeptide. (94 aa)
Lsm11Uncharacterized protein. (156 aa)
SLU7SLU7 homolog, splicing factor. (587 aa)
CSTF3Cleavage stimulation factor subunit 3. (718 aa)
TPRG1Tumor protein p63 regulated 1. (263 aa)
FYTTD1Forty-two-three domain containing 1. (310 aa)
SNRPGSmall nuclear ribonucleoprotein G. (76 aa)
DHX38DEAH-box helicase 38. (1246 aa)
THOC1THO complex 1. (674 aa)
MAGOHMago homolog, exon junction complex subunit. (146 aa)
THOC5THO complex 5. (684 aa)
CPSF2Cleavage and polyadenylation specificity factor subunit 2. (783 aa)
ZNF318Zinc finger protein 318. (1584 aa)
CPSF1Cleavage and polyadenylation specific factor 1. (1334 aa)
SNRPESmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
THOC6THO complex 6. (360 aa)
ALYREFAly/REF export factor. (255 aa)
fip1l1Fip1 domain-containing protein. (578 aa)
DDX39ADExD-box helicase 39A. (427 aa)
CDC40Cell division cycle 40. (543 aa)
C12orf50Chromosome 12 open reading frame 50. (431 aa)
CHTOPChromatin target of PRMT1. (247 aa)
THOC2THO complex 2. (1605 aa)
DDX39BDExD-box helicase 39B. (429 aa)
CPSF4Cleavage and polyadenylation specific factor 4. (302 aa)
PABPN1LPoly(A) binding protein nuclear 1 like, cytoplasmic. (184 aa)
Wdr25Uncharacterized protein. (154 aa)
PAPOLAPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (756 aa)
SRSF11Serine and arginine rich splicing factor 11. (456 aa)
SNRPFSmall nuclear ribonucleoprotein polypeptide F. (87 aa)
EIF4A3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (431 aa)
LOC100565538Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (168 aa)
SARNPSAP domain containing ribonucleoprotein. (213 aa)
U2AF2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (469 aa)
CSTF1Cleavage stimulation factor subunit 1. (431 aa)
zc3h13C3H1-type domain-containing protein. (1554 aa)
SRSF3Serine and arginine rich splicing factor 3. (164 aa)
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
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