STRINGSTRING
LOC100560345 LOC100560345 MNAT1 MNAT1 LOC100563266 LOC100563266 POLR1C POLR1C ERCC3 ERCC3 LOC100558064 LOC100558064 GTF2H4 GTF2H4 ZNRD1 ZNRD1 LOC103281873 LOC103281873 LOC103282265 LOC103282265 POLR2K POLR2K CAVIN1 CAVIN1 ubtf ubtf CDK7 CDK7 POLR2L POLR2L POLR2F POLR2F GTF2H3 GTF2H3 taf1d taf1d POLR1A POLR1A TWISTNB TWISTNB TAF1B TAF1B GTF2H1 GTF2H1 CCNH CCNH TAF1A TAF1A tbp tbp POLR2H POLR2H GTF2H5 GTF2H5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC100560345Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (587 aa)
MNAT1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)
LOC100563266DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (691 aa)
POLR1CRNA polymerase I and III subunit C. (348 aa)
ERCC3ERCC excision repair 3, TFIIH core complex helicase subunit. (719 aa)
LOC100558064General transcription factor IIH subunit. (392 aa)
GTF2H4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (460 aa)
ZNRD1DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (120 aa)
LOC103281873Uncharacterized protein. (309 aa)
LOC103282265Uncharacterized protein. (414 aa)
POLR2KRNA polymerase II subunit K. (58 aa)
CAVIN1Caveolae associated protein 1. (369 aa)
ubtfUncharacterized protein. (760 aa)
CDK7Cyclin dependent kinase 7; Belongs to the protein kinase superfamily. (345 aa)
POLR2LRNA polymerase II subunit L. (67 aa)
POLR2FRNA polymerase II subunit F. (127 aa)
GTF2H3General transcription factor IIH subunit 3. (311 aa)
taf1dUncharacterized protein. (196 aa)
POLR1ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1704 aa)
TWISTNBTWIST neighbor. (197 aa)
TAF1BTATA-box binding protein associated factor, RNA polymerase I subunit B. (660 aa)
GTF2H1General transcription factor IIH subunit 1. (571 aa)
CCNHCyclin H; Belongs to the cyclin family. (318 aa)
TAF1ATATA-box binding protein associated factor, RNA polymerase I subunit A. (439 aa)
tbpUncharacterized protein. (300 aa)
POLR2HDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
GTF2H5General transcription factor IIH subunit 5. (71 aa)
Your Current Organism:
Anolis carolinensis
NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole
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