37 items (Anolis carolinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SNAPC3	Small nuclear RNA activating complex polypeptide 3. (430 aa)
	POLR3B	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1132 aa)
	POLR2L	RNA polymerase II subunit L. (67 aa)
	BRF1	BRF1 RNA polymerase III transcription initiation factor subunit. (672 aa)
	SNAPC1	Small nuclear RNA activating complex polypeptide 1. (435 aa)
	GTF3C1	General transcription factor IIIC subunit 1. (1925 aa)
	polr3k	RPOL9 domain-containing protein. (66 aa)
	SSB	Small RNA binding exonuclease protection factor La. (406 aa)
	NFIX	Nuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (503 aa)
	G1KTI0_ANOCA	CTF/NF-I domain-containing protein. (198 aa)
	POLR2F	RNA polymerase II subunit F. (127 aa)
	POLR3F	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (310 aa)
	POLR3E	RNA polymerase III subunit E. (700 aa)
	LOC103282884	Uncharacterized protein. (163 aa)
	GTF3C6	General transcription factor IIIC subunit 6. (219 aa)
	POLR3H	RNA polymerase III subunit H. (206 aa)
	POLR3D	RNA polymerase III subunit D. (385 aa)
	G1KJK4_ANOCA	SANT domain-containing protein. (460 aa)
	POLR1C	RNA polymerase I and III subunit C. (348 aa)
	ZNF143	Zinc finger protein 143. (638 aa)
	POLR3A	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1319 aa)
	nfia	Uncharacterized protein. (336 aa)
	GTF3C2	General transcription factor IIIC subunit 2. (968 aa)
	GTF3A	General transcription factor IIIA. (331 aa)
	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	tbp	Uncharacterized protein. (300 aa)
	tbpl2	Uncharacterized protein. (192 aa)
	TBPL1	TATA-box binding protein like 1. (186 aa)
	BRF2	BRF2 RNA polymerase III transcription initiation factor subunit. (422 aa)
	gtf3c5	Uncharacterized protein. (132 aa)
	H9GVV6_ANOCA	Uncharacterized protein. (31 aa)
	snapc2	Uncharacterized protein. (335 aa)
	GTF3C3	General transcription factor IIIC subunit 3. (916 aa)
	nfic	Uncharacterized protein. (148 aa)
	G1KV68_ANOCA	Uncharacterized protein. (480 aa)
	POLR2K	RNA polymerase II subunit K. (58 aa)
	NFIB	Nuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (566 aa)

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRF1	BRF2	ENSACAP00000015460	ENSACAP00000000214	BRF1 RNA polymerase III transcription initiation factor subunit.	BRF2 RNA polymerase III transcription initiation factor subunit.	0.700
BRF1	G1KJK4_ANOCA	ENSACAP00000015460	ENSACAP00000009807	BRF1 RNA polymerase III transcription initiation factor subunit.	SANT domain-containing protein.	0.961
BRF1	G1KV68_ANOCA	ENSACAP00000015460	ENSACAP00000018308	BRF1 RNA polymerase III transcription initiation factor subunit.	Uncharacterized protein.	0.981
BRF1	GTF3A	ENSACAP00000015460	ENSACAP00000003130	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIA.	0.721
BRF1	GTF3C1	ENSACAP00000015460	ENSACAP00000016222	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 1.	0.932
BRF1	GTF3C2	ENSACAP00000015460	ENSACAP00000007579	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 2.	0.798
BRF1	GTF3C3	ENSACAP00000015460	ENSACAP00000020490	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 3.	0.998
BRF1	H9GVV6_ANOCA	ENSACAP00000015460	ENSACAP00000021567	BRF1 RNA polymerase III transcription initiation factor subunit.	Uncharacterized protein.	0.866
BRF1	LOC103282884	ENSACAP00000015460	ENSACAP00000011379	BRF1 RNA polymerase III transcription initiation factor subunit.	Uncharacterized protein.	0.480
BRF1	POLR1C	ENSACAP00000015460	ENSACAP00000009594	BRF1 RNA polymerase III transcription initiation factor subunit.	RNA polymerase I and III subunit C.	0.959
BRF1	POLR2F	ENSACAP00000015460	ENSACAP00000015030	BRF1 RNA polymerase III transcription initiation factor subunit.	RNA polymerase II subunit F.	0.918
BRF1	POLR2H	ENSACAP00000015460	ENSACAP00000002728	BRF1 RNA polymerase III transcription initiation factor subunit.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.908
BRF1	POLR2K	ENSACAP00000015460	ENSACAP00000017962	BRF1 RNA polymerase III transcription initiation factor subunit.	RNA polymerase II subunit K.	0.960
BRF1	POLR2L	ENSACAP00000015460	ENSACAP00000015241	BRF1 RNA polymerase III transcription initiation factor subunit.	RNA polymerase II subunit L.	0.846
BRF1	POLR3A	ENSACAP00000015460	ENSACAP00000007911	BRF1 RNA polymerase III transcription initiation factor subunit.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.979
BRF1	POLR3B	ENSACAP00000015460	ENSACAP00000015211	BRF1 RNA polymerase III transcription initiation factor subunit.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.979
BRF1	POLR3D	ENSACAP00000015460	ENSACAP00000010426	BRF1 RNA polymerase III transcription initiation factor subunit.	RNA polymerase III subunit D.	0.949
BRF1	POLR3E	ENSACAP00000015460	ENSACAP00000012366	BRF1 RNA polymerase III transcription initiation factor subunit.	RNA polymerase III subunit E.	0.946
BRF1	POLR3F	ENSACAP00000015460	ENSACAP00000014065	BRF1 RNA polymerase III transcription initiation factor subunit.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.989
BRF1	POLR3H	ENSACAP00000015460	ENSACAP00000011010	BRF1 RNA polymerase III transcription initiation factor subunit.	RNA polymerase III subunit H.	0.938