25 items (Anolis carolinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	POLR2F	RNA polymerase II subunit F. (127 aa)
	POLR2L	RNA polymerase II subunit L. (67 aa)
	BRF1	BRF1 RNA polymerase III transcription initiation factor subunit. (672 aa)
	GTF3C1	General transcription factor IIIC subunit 1. (1925 aa)
	polr3k	RPOL9 domain-containing protein. (66 aa)
	POLR2K	RNA polymerase II subunit K. (58 aa)
	G1KV68_ANOCA	Uncharacterized protein. (480 aa)
	GTF3C3	General transcription factor IIIC subunit 3. (916 aa)
	H9GVV6_ANOCA	Uncharacterized protein. (31 aa)
	POLR3E	RNA polymerase III subunit E. (700 aa)
	GTF3C6	General transcription factor IIIC subunit 6. (219 aa)
	POLR3H	RNA polymerase III subunit H. (206 aa)
	POLR3D	RNA polymerase III subunit D. (385 aa)
	G1KJK4_ANOCA	SANT domain-containing protein. (460 aa)
	POLR1C	RNA polymerase I and III subunit C. (348 aa)
	POLR3A	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1319 aa)
	GTF3C2	General transcription factor IIIC subunit 2. (968 aa)
	GTF3A	General transcription factor IIIA. (331 aa)
	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	tbp	Uncharacterized protein. (300 aa)
	tbpl2	Uncharacterized protein. (192 aa)
	TBPL1	TATA-box binding protein like 1. (186 aa)
	gtf3c5	Uncharacterized protein. (132 aa)
	POLR3F	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (310 aa)
	POLR3B	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1132 aa)

Your Current Organism:

Anolis carolinensis

NCBI taxonomy Id: 28377
Other names: A. carolinensis, Carolina anole, UCMZ 53793, green anole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRF1	G1KJK4_ANOCA	ENSACAP00000015460	ENSACAP00000009807	BRF1 RNA polymerase III transcription initiation factor subunit.	SANT domain-containing protein.	0.961
BRF1	G1KV68_ANOCA	ENSACAP00000015460	ENSACAP00000018308	BRF1 RNA polymerase III transcription initiation factor subunit.	Uncharacterized protein.	0.981
BRF1	GTF3A	ENSACAP00000015460	ENSACAP00000003130	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIA.	0.721
BRF1	GTF3C1	ENSACAP00000015460	ENSACAP00000016222	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 1.	0.932
BRF1	GTF3C2	ENSACAP00000015460	ENSACAP00000007579	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 2.	0.798
BRF1	GTF3C3	ENSACAP00000015460	ENSACAP00000020490	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 3.	0.998
BRF1	H9GVV6_ANOCA	ENSACAP00000015460	ENSACAP00000021567	BRF1 RNA polymerase III transcription initiation factor subunit.	Uncharacterized protein.	0.866
BRF1	POLR1C	ENSACAP00000015460	ENSACAP00000009594	BRF1 RNA polymerase III transcription initiation factor subunit.	RNA polymerase I and III subunit C.	0.959
BRF1	POLR2F	ENSACAP00000015460	ENSACAP00000015030	BRF1 RNA polymerase III transcription initiation factor subunit.	RNA polymerase II subunit F.	0.918
BRF1	POLR2H	ENSACAP00000015460	ENSACAP00000002728	BRF1 RNA polymerase III transcription initiation factor subunit.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.908
BRF1	POLR2K	ENSACAP00000015460	ENSACAP00000017962	BRF1 RNA polymerase III transcription initiation factor subunit.	RNA polymerase II subunit K.	0.960
BRF1	POLR2L	ENSACAP00000015460	ENSACAP00000015241	BRF1 RNA polymerase III transcription initiation factor subunit.	RNA polymerase II subunit L.	0.846
BRF1	POLR3A	ENSACAP00000015460	ENSACAP00000007911	BRF1 RNA polymerase III transcription initiation factor subunit.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.979
BRF1	POLR3B	ENSACAP00000015460	ENSACAP00000015211	BRF1 RNA polymerase III transcription initiation factor subunit.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.979
BRF1	POLR3D	ENSACAP00000015460	ENSACAP00000010426	BRF1 RNA polymerase III transcription initiation factor subunit.	RNA polymerase III subunit D.	0.949
BRF1	POLR3E	ENSACAP00000015460	ENSACAP00000012366	BRF1 RNA polymerase III transcription initiation factor subunit.	RNA polymerase III subunit E.	0.946
BRF1	POLR3F	ENSACAP00000015460	ENSACAP00000014065	BRF1 RNA polymerase III transcription initiation factor subunit.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.989
BRF1	POLR3H	ENSACAP00000015460	ENSACAP00000011010	BRF1 RNA polymerase III transcription initiation factor subunit.	RNA polymerase III subunit H.	0.938
BRF1	TBPL1	ENSACAP00000015460	ENSACAP00000000330	BRF1 RNA polymerase III transcription initiation factor subunit.	TATA-box binding protein like 1.	0.838
BRF1	gtf3c5	ENSACAP00000015460	ENSACAP00000000003	BRF1 RNA polymerase III transcription initiation factor subunit.	Uncharacterized protein.	0.790