(10 nodes) Mixed, incl. PRKR-interacting protein 1, and SDE2-like, C-terminal domain network (Capitella teleta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7T804_CAPTE	Nkap_C domain-containing protein. (206 aa)
	R7TNS6_CAPTE	Uncharacterized protein. (200 aa)
	R7TPR6_CAPTE	Sde2_N_Ubi domain-containing protein. (390 aa)
	R7U0M9_CAPTE	Uncharacterized protein. (88 aa)
	R7UCQ9_CAPTE	Uncharacterized protein. (140 aa)
	R7UGC3_CAPTE	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (164 aa)
	R7USM9_CAPTE	Helicase C-terminal domain-containing protein. (227 aa)
	R7UXR5_CAPTE	Uncharacterized protein. (154 aa)
	R7V0G5_CAPTE	WD_REPEATS_REGION domain-containing protein. (335 aa)
	R7V9A9_CAPTE	U-box domain-containing protein. (230 aa)

Your Current Organism:

Capitella teleta

NCBI taxonomy Id: 283909
Other names: C. teleta, Capitella sp. I, Capitella sp. I AF-2005, Capitella sp. I ECS-2004, Capitella sp. I ES-2005, Capitella sp. MKJ-2016, Capitella teleta Blake, Grassle & Eckelbarger, 2009

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7T804_CAPTE	R7TNS6_CAPTE	R7T804	R7TNS6	Nkap_C domain-containing protein.	Uncharacterized protein.	0.896
R7T804_CAPTE	R7TPR6_CAPTE	R7T804	R7TPR6	Nkap_C domain-containing protein.	Sde2_N_Ubi domain-containing protein.	0.926
R7T804_CAPTE	R7U0M9_CAPTE	R7T804	R7U0M9	Nkap_C domain-containing protein.	Uncharacterized protein.	0.930
R7T804_CAPTE	R7UCQ9_CAPTE	R7T804	R7UCQ9	Nkap_C domain-containing protein.	Uncharacterized protein.	0.896
R7T804_CAPTE	R7UGC3_CAPTE	R7T804	R7UGC3	Nkap_C domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.757
R7T804_CAPTE	R7USM9_CAPTE	R7T804	R7USM9	Nkap_C domain-containing protein.	Helicase C-terminal domain-containing protein.	0.696
R7T804_CAPTE	R7V0G5_CAPTE	R7T804	R7V0G5	Nkap_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.804
R7T804_CAPTE	R7V9A9_CAPTE	R7T804	R7V9A9	Nkap_C domain-containing protein.	U-box domain-containing protein.	0.735
R7TNS6_CAPTE	R7T804_CAPTE	R7TNS6	R7T804	Uncharacterized protein.	Nkap_C domain-containing protein.	0.896
R7TNS6_CAPTE	R7TPR6_CAPTE	R7TNS6	R7TPR6	Uncharacterized protein.	Sde2_N_Ubi domain-containing protein.	0.920
R7TNS6_CAPTE	R7U0M9_CAPTE	R7TNS6	R7U0M9	Uncharacterized protein.	Uncharacterized protein.	0.923
R7TNS6_CAPTE	R7UGC3_CAPTE	R7TNS6	R7UGC3	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.756
R7TNS6_CAPTE	R7USM9_CAPTE	R7TNS6	R7USM9	Uncharacterized protein.	Helicase C-terminal domain-containing protein.	0.640
R7TNS6_CAPTE	R7UXR5_CAPTE	R7TNS6	R7UXR5	Uncharacterized protein.	Uncharacterized protein.	0.712
R7TNS6_CAPTE	R7V0G5_CAPTE	R7TNS6	R7V0G5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.834
R7TNS6_CAPTE	R7V9A9_CAPTE	R7TNS6	R7V9A9	Uncharacterized protein.	U-box domain-containing protein.	0.656
R7TPR6_CAPTE	R7T804_CAPTE	R7TPR6	R7T804	Sde2_N_Ubi domain-containing protein.	Nkap_C domain-containing protein.	0.926
R7TPR6_CAPTE	R7TNS6_CAPTE	R7TPR6	R7TNS6	Sde2_N_Ubi domain-containing protein.	Uncharacterized protein.	0.920
R7TPR6_CAPTE	R7U0M9_CAPTE	R7TPR6	R7U0M9	Sde2_N_Ubi domain-containing protein.	Uncharacterized protein.	0.954
R7TPR6_CAPTE	R7UCQ9_CAPTE	R7TPR6	R7UCQ9	Sde2_N_Ubi domain-containing protein.	Uncharacterized protein.	0.920

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