(10 nodes) Mixed, incl. cyclin/CDK positive transcription elongation factor complex, and RNA polymerase II transcription factor SIII, subunit A network (Capitella teleta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7TFS4_CAPTE	Protein kinase domain-containing protein. (346 aa)
	R7TMD7_CAPTE	Uncharacterized protein. (258 aa)
	R7TQW0_CAPTE	Uncharacterized protein. (606 aa)
	R7TY20_CAPTE	EAF domain-containing protein. (233 aa)
	R7UEB3_CAPTE	Uncharacterized protein; Belongs to the cyclin family. (250 aa)
	R7URU4_CAPTE	Uncharacterized protein. (258 aa)
	R7UY56_CAPTE	Uncharacterized protein; Belongs to the cyclin family. (271 aa)
	R7V030_CAPTE	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (169 aa)
	R7VGY3_CAPTE	TFIIS N-terminal domain-containing protein. (444 aa)
	R7VID7_CAPTE	TFIIS N-terminal domain-containing protein. (855 aa)

Your Current Organism:

Capitella teleta

NCBI taxonomy Id: 283909
Other names: C. teleta, Capitella sp. I, Capitella sp. I AF-2005, Capitella sp. I ECS-2004, Capitella sp. I ES-2005, Capitella sp. MKJ-2016, Capitella teleta Blake, Grassle & Eckelbarger, 2009

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7TFS4_CAPTE	R7TMD7_CAPTE	R7TFS4	R7TMD7	Protein kinase domain-containing protein.	Uncharacterized protein.	0.840
R7TFS4_CAPTE	R7TQW0_CAPTE	R7TFS4	R7TQW0	Protein kinase domain-containing protein.	Uncharacterized protein.	0.684
R7TFS4_CAPTE	R7UEB3_CAPTE	R7TFS4	R7UEB3	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.985
R7TFS4_CAPTE	R7UY56_CAPTE	R7TFS4	R7UY56	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.998
R7TFS4_CAPTE	R7V030_CAPTE	R7TFS4	R7V030	Protein kinase domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.789
R7TFS4_CAPTE	R7VGY3_CAPTE	R7TFS4	R7VGY3	Protein kinase domain-containing protein.	TFIIS N-terminal domain-containing protein.	0.666
R7TFS4_CAPTE	R7VID7_CAPTE	R7TFS4	R7VID7	Protein kinase domain-containing protein.	TFIIS N-terminal domain-containing protein.	0.666
R7TMD7_CAPTE	R7TFS4_CAPTE	R7TMD7	R7TFS4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.840
R7TMD7_CAPTE	R7TQW0_CAPTE	R7TMD7	R7TQW0	Uncharacterized protein.	Uncharacterized protein.	0.687
R7TMD7_CAPTE	R7TY20_CAPTE	R7TMD7	R7TY20	Uncharacterized protein.	EAF domain-containing protein.	0.688
R7TMD7_CAPTE	R7UEB3_CAPTE	R7TMD7	R7UEB3	Uncharacterized protein.	Uncharacterized protein; Belongs to the cyclin family.	0.702
R7TMD7_CAPTE	R7UY56_CAPTE	R7TMD7	R7UY56	Uncharacterized protein.	Uncharacterized protein; Belongs to the cyclin family.	0.702
R7TMD7_CAPTE	R7V030_CAPTE	R7TMD7	R7V030	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.702
R7TMD7_CAPTE	R7VGY3_CAPTE	R7TMD7	R7VGY3	Uncharacterized protein.	TFIIS N-terminal domain-containing protein.	0.597
R7TMD7_CAPTE	R7VID7_CAPTE	R7TMD7	R7VID7	Uncharacterized protein.	TFIIS N-terminal domain-containing protein.	0.597
R7TQW0_CAPTE	R7TFS4_CAPTE	R7TQW0	R7TFS4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.684
R7TQW0_CAPTE	R7TMD7_CAPTE	R7TQW0	R7TMD7	Uncharacterized protein.	Uncharacterized protein.	0.687
R7TQW0_CAPTE	R7TY20_CAPTE	R7TQW0	R7TY20	Uncharacterized protein.	EAF domain-containing protein.	0.992
R7TQW0_CAPTE	R7UEB3_CAPTE	R7TQW0	R7UEB3	Uncharacterized protein.	Uncharacterized protein; Belongs to the cyclin family.	0.929
R7TQW0_CAPTE	R7URU4_CAPTE	R7TQW0	R7URU4	Uncharacterized protein.	Uncharacterized protein.	0.982

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