(12 nodes) Mixed, incl. Histone H3-tri/dimethyl-lysine-9 demethylase activity, and Regulator of chromosome condensation (RCC1) repeat network (Capitella teleta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7TG62_CAPTE	Uncharacterized protein. (4817 aa)
	R7TL15_CAPTE	HECT domain-containing protein. (227 aa)
	R7TVG6_CAPTE	Uncharacterized protein. (752 aa)
	R7TVJ5_CAPTE	Uncharacterized protein. (1433 aa)
	R7TZK6_CAPTE	RING-type domain-containing protein. (187 aa)
	R7U206_CAPTE	Uncharacterized protein. (1028 aa)
	R7U5D1_CAPTE	Uncharacterized protein. (627 aa)
	R7U9Q6_CAPTE	JmjN domain-containing protein. (91 aa)
	R7UC06_CAPTE	Uncharacterized protein. (1874 aa)
	R7UDI3_CAPTE	B30.2/SPRY domain-containing protein. (2094 aa)
	R7UDJ5_CAPTE	RING-type domain-containing protein. (429 aa)
	R7UXT4_CAPTE	Uncharacterized protein. (311 aa)

Your Current Organism:

Capitella teleta

NCBI taxonomy Id: 283909
Other names: C. teleta, Capitella sp. I, Capitella sp. I AF-2005, Capitella sp. I ECS-2004, Capitella sp. I ES-2005, Capitella sp. MKJ-2016, Capitella teleta Blake, Grassle & Eckelbarger, 2009

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Export your current network:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7TG62_CAPTE	R7TVG6_CAPTE	R7TG62	R7TVG6	Uncharacterized protein.	Uncharacterized protein.	0.702
R7TG62_CAPTE	R7TVJ5_CAPTE	R7TG62	R7TVJ5	Uncharacterized protein.	Uncharacterized protein.	0.643
R7TG62_CAPTE	R7TZK6_CAPTE	R7TG62	R7TZK6	Uncharacterized protein.	RING-type domain-containing protein.	0.597
R7TG62_CAPTE	R7U206_CAPTE	R7TG62	R7U206	Uncharacterized protein.	Uncharacterized protein.	0.546
R7TG62_CAPTE	R7U9Q6_CAPTE	R7TG62	R7U9Q6	Uncharacterized protein.	JmjN domain-containing protein.	0.546
R7TG62_CAPTE	R7UDJ5_CAPTE	R7TG62	R7UDJ5	Uncharacterized protein.	RING-type domain-containing protein.	0.702
R7TG62_CAPTE	R7UXT4_CAPTE	R7TG62	R7UXT4	Uncharacterized protein.	Uncharacterized protein.	0.584
R7TL15_CAPTE	R7TVG6_CAPTE	R7TL15	R7TVG6	HECT domain-containing protein.	Uncharacterized protein.	0.702
R7TL15_CAPTE	R7TVJ5_CAPTE	R7TL15	R7TVJ5	HECT domain-containing protein.	Uncharacterized protein.	0.643
R7TL15_CAPTE	R7TZK6_CAPTE	R7TL15	R7TZK6	HECT domain-containing protein.	RING-type domain-containing protein.	0.597
R7TL15_CAPTE	R7U206_CAPTE	R7TL15	R7U206	HECT domain-containing protein.	Uncharacterized protein.	0.546
R7TL15_CAPTE	R7U5D1_CAPTE	R7TL15	R7U5D1	HECT domain-containing protein.	Uncharacterized protein.	0.937
R7TL15_CAPTE	R7U9Q6_CAPTE	R7TL15	R7U9Q6	HECT domain-containing protein.	JmjN domain-containing protein.	0.546
R7TL15_CAPTE	R7UDI3_CAPTE	R7TL15	R7UDI3	HECT domain-containing protein.	B30.2/SPRY domain-containing protein.	0.943
R7TL15_CAPTE	R7UDJ5_CAPTE	R7TL15	R7UDJ5	HECT domain-containing protein.	RING-type domain-containing protein.	0.702
R7TL15_CAPTE	R7UXT4_CAPTE	R7TL15	R7UXT4	HECT domain-containing protein.	Uncharacterized protein.	0.584
R7TVG6_CAPTE	R7TG62_CAPTE	R7TVG6	R7TG62	Uncharacterized protein.	Uncharacterized protein.	0.702
R7TVG6_CAPTE	R7TL15_CAPTE	R7TVG6	R7TL15	Uncharacterized protein.	HECT domain-containing protein.	0.702
R7TVG6_CAPTE	R7TZK6_CAPTE	R7TVG6	R7TZK6	Uncharacterized protein.	RING-type domain-containing protein.	0.628
R7TVG6_CAPTE	R7U206_CAPTE	R7TVG6	R7U206	Uncharacterized protein.	Uncharacterized protein.	0.602

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