(19 nodes) Mixed, incl. High mobility group, and POU domain network (Capitella teleta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7T6H5_CAPTE	Uncharacterized protein. (437 aa)
	R7T7Q2_CAPTE	HMG box domain-containing protein. (121 aa)
	R7TDB7_CAPTE	Uncharacterized protein. (390 aa)
	R7TFI0_CAPTE	Uncharacterized protein. (1371 aa)
	R7TLV4_CAPTE	BAH domain-containing protein. (237 aa)
	R7TQ02_CAPTE	Uncharacterized protein. (486 aa)
	R7TW47_CAPTE	HMG box domain-containing protein. (115 aa)
	R7TWL3_CAPTE	HMG box domain-containing protein. (230 aa)
	R7UIR6_CAPTE	HMG box domain-containing protein. (75 aa)
	R7UK02_CAPTE	POU domain protein. (165 aa)
	R7UN15_CAPTE	Uncharacterized protein. (360 aa)
	R7UTJ6_CAPTE	POU domain protein. (353 aa)
	R7UV15_CAPTE	Uncharacterized protein. (350 aa)
	R7UXV6_CAPTE	Uncharacterized protein. (491 aa)
	R7V1J9_CAPTE	HMG box domain-containing protein. (364 aa)
	R7V2G4_CAPTE	Uncharacterized protein. (393 aa)
	R7V6L5_CAPTE	Uncharacterized protein. (67 aa)
	R7VCA4_CAPTE	POU domain protein. (591 aa)
	R7VDT2_CAPTE	HMG box domain-containing protein. (453 aa)

Your Current Organism:

Capitella teleta

NCBI taxonomy Id: 283909
Other names: C. teleta, Capitella sp. I, Capitella sp. I AF-2005, Capitella sp. I ECS-2004, Capitella sp. I ES-2005, Capitella sp. MKJ-2016, Capitella teleta Blake, Grassle & Eckelbarger, 2009

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7T6H5_CAPTE	R7TDB7_CAPTE	R7T6H5	R7TDB7	Uncharacterized protein.	Uncharacterized protein.	0.622
R7T6H5_CAPTE	R7TFI0_CAPTE	R7T6H5	R7TFI0	Uncharacterized protein.	Uncharacterized protein.	0.762
R7T6H5_CAPTE	R7TLV4_CAPTE	R7T6H5	R7TLV4	Uncharacterized protein.	BAH domain-containing protein.	0.735
R7T6H5_CAPTE	R7TQ02_CAPTE	R7T6H5	R7TQ02	Uncharacterized protein.	Uncharacterized protein.	0.604
R7T7Q2_CAPTE	R7TW47_CAPTE	R7T7Q2	R7TW47	HMG box domain-containing protein.	HMG box domain-containing protein.	0.652
R7T7Q2_CAPTE	R7TWL3_CAPTE	R7T7Q2	R7TWL3	HMG box domain-containing protein.	HMG box domain-containing protein.	0.632
R7T7Q2_CAPTE	R7UIR6_CAPTE	R7T7Q2	R7UIR6	HMG box domain-containing protein.	HMG box domain-containing protein.	0.626
R7T7Q2_CAPTE	R7V1J9_CAPTE	R7T7Q2	R7V1J9	HMG box domain-containing protein.	HMG box domain-containing protein.	0.622
R7T7Q2_CAPTE	R7VDT2_CAPTE	R7T7Q2	R7VDT2	HMG box domain-containing protein.	HMG box domain-containing protein.	0.698
R7TDB7_CAPTE	R7T6H5_CAPTE	R7TDB7	R7T6H5	Uncharacterized protein.	Uncharacterized protein.	0.622
R7TDB7_CAPTE	R7TQ02_CAPTE	R7TDB7	R7TQ02	Uncharacterized protein.	Uncharacterized protein.	0.595
R7TDB7_CAPTE	R7UN15_CAPTE	R7TDB7	R7UN15	Uncharacterized protein.	Uncharacterized protein.	0.641
R7TDB7_CAPTE	R7V2G4_CAPTE	R7TDB7	R7V2G4	Uncharacterized protein.	Uncharacterized protein.	0.628
R7TFI0_CAPTE	R7T6H5_CAPTE	R7TFI0	R7T6H5	Uncharacterized protein.	Uncharacterized protein.	0.762
R7TFI0_CAPTE	R7UK02_CAPTE	R7TFI0	R7UK02	Uncharacterized protein.	POU domain protein.	0.587
R7TFI0_CAPTE	R7UN15_CAPTE	R7TFI0	R7UN15	Uncharacterized protein.	Uncharacterized protein.	0.762
R7TFI0_CAPTE	R7UXV6_CAPTE	R7TFI0	R7UXV6	Uncharacterized protein.	Uncharacterized protein.	0.402
R7TFI0_CAPTE	R7V2G4_CAPTE	R7TFI0	R7V2G4	Uncharacterized protein.	Uncharacterized protein.	0.762
R7TFI0_CAPTE	R7V6L5_CAPTE	R7TFI0	R7V6L5	Uncharacterized protein.	Uncharacterized protein.	0.580
R7TLV4_CAPTE	R7T6H5_CAPTE	R7TLV4	R7T6H5	BAH domain-containing protein.	Uncharacterized protein.	0.735

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