(15 nodes) Protein deneddylation, and Cul4B-RING E3 ubiquitin ligase complex network (Capitella teleta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7T7A1_CAPTE	MPN domain-containing protein. (313 aa)
	R7TCZ7_CAPTE	PCI domain-containing protein. (191 aa)
	R7TEC9_CAPTE	PCI domain-containing protein. (431 aa)
	R7THS3_CAPTE	WD_REPEATS_REGION domain-containing protein. (602 aa)
	R7TLY6_CAPTE	CULLIN_2 domain-containing protein; Belongs to the cullin family. (767 aa)
	R7TP68_CAPTE	PCI domain-containing protein. (192 aa)
	R7TQQ3_CAPTE	PCI domain-containing protein. (436 aa)
	R7U4I2_CAPTE	WD_REPEATS_REGION domain-containing protein. (708 aa)
	R7UIH1_CAPTE	CPSF_A domain-containing protein. (1084 aa)
	R7UNI1_CAPTE	PCI domain-containing protein. (409 aa)
	R7UT66_CAPTE	PCI domain-containing protein. (265 aa)
	R7UXF4_CAPTE	MPN domain-containing protein. (275 aa)
	R7UZX3_CAPTE	PCI domain-containing protein. (469 aa)
	R7V2X1_CAPTE	RING-type domain-containing protein. (82 aa)
	R7VI33_CAPTE	Uncharacterized protein. (278 aa)

Your Current Organism:

Capitella teleta

NCBI taxonomy Id: 283909
Other names: C. teleta, Capitella sp. I, Capitella sp. I AF-2005, Capitella sp. I ECS-2004, Capitella sp. I ES-2005, Capitella sp. MKJ-2016, Capitella teleta Blake, Grassle & Eckelbarger, 2009

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7T7A1_CAPTE	R7TCZ7_CAPTE	R7T7A1	R7TCZ7	MPN domain-containing protein.	PCI domain-containing protein.	0.991
R7T7A1_CAPTE	R7TEC9_CAPTE	R7T7A1	R7TEC9	MPN domain-containing protein.	PCI domain-containing protein.	0.998
R7T7A1_CAPTE	R7THS3_CAPTE	R7T7A1	R7THS3	MPN domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.908
R7T7A1_CAPTE	R7TLY6_CAPTE	R7T7A1	R7TLY6	MPN domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.934
R7T7A1_CAPTE	R7TP68_CAPTE	R7T7A1	R7TP68	MPN domain-containing protein.	PCI domain-containing protein.	0.994
R7T7A1_CAPTE	R7TQQ3_CAPTE	R7T7A1	R7TQQ3	MPN domain-containing protein.	PCI domain-containing protein.	0.991
R7T7A1_CAPTE	R7U4I2_CAPTE	R7T7A1	R7U4I2	MPN domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.769
R7T7A1_CAPTE	R7UIH1_CAPTE	R7T7A1	R7UIH1	MPN domain-containing protein.	CPSF_A domain-containing protein.	0.934
R7T7A1_CAPTE	R7UNI1_CAPTE	R7T7A1	R7UNI1	MPN domain-containing protein.	PCI domain-containing protein.	0.999
R7T7A1_CAPTE	R7UT66_CAPTE	R7T7A1	R7UT66	MPN domain-containing protein.	PCI domain-containing protein.	0.993
R7T7A1_CAPTE	R7UXF4_CAPTE	R7T7A1	R7UXF4	MPN domain-containing protein.	MPN domain-containing protein.	0.995
R7T7A1_CAPTE	R7UZX3_CAPTE	R7T7A1	R7UZX3	MPN domain-containing protein.	PCI domain-containing protein.	0.998
R7T7A1_CAPTE	R7V2X1_CAPTE	R7T7A1	R7V2X1	MPN domain-containing protein.	RING-type domain-containing protein.	0.841
R7T7A1_CAPTE	R7VI33_CAPTE	R7T7A1	R7VI33	MPN domain-containing protein.	Uncharacterized protein.	0.989
R7TCZ7_CAPTE	R7T7A1_CAPTE	R7TCZ7	R7T7A1	PCI domain-containing protein.	MPN domain-containing protein.	0.991
R7TCZ7_CAPTE	R7TEC9_CAPTE	R7TCZ7	R7TEC9	PCI domain-containing protein.	PCI domain-containing protein.	0.992
R7TCZ7_CAPTE	R7THS3_CAPTE	R7TCZ7	R7THS3	PCI domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.862
R7TCZ7_CAPTE	R7TLY6_CAPTE	R7TCZ7	R7TLY6	PCI domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.876
R7TCZ7_CAPTE	R7TP68_CAPTE	R7TCZ7	R7TP68	PCI domain-containing protein.	PCI domain-containing protein.	0.993
R7TCZ7_CAPTE	R7U4I2_CAPTE	R7TCZ7	R7U4I2	PCI domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.706

page 1 of 11

Server load: low (20%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About