(11 nodes) Protein quiver, and Maintenance of blood-brain barrier network (Capitella teleta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7T886_CAPTE	Uncharacterized protein. (122 aa)
	R7T8B9_CAPTE	Uncharacterized protein. (154 aa)
	R7TDM4_CAPTE	Uncharacterized protein. (144 aa)
	R7TGI9_CAPTE	Uncharacterized protein. (145 aa)
	R7U6D4_CAPTE	PIP49_C domain-containing protein. (308 aa)
	R7UF38_CAPTE	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (135 aa)
	R7UQC9_CAPTE	Uncharacterized protein. (160 aa)
	R7URW9_CAPTE	Uncharacterized protein. (155 aa)
	R7UYH4_CAPTE	Uncharacterized protein. (816 aa)
	R7V544_CAPTE	Uncharacterized protein. (147 aa)
	R7VAA0_CAPTE	Uncharacterized protein. (143 aa)

Your Current Organism:

Capitella teleta

NCBI taxonomy Id: 283909
Other names: C. teleta, Capitella sp. I, Capitella sp. I AF-2005, Capitella sp. I ECS-2004, Capitella sp. I ES-2005, Capitella sp. MKJ-2016, Capitella teleta Blake, Grassle & Eckelbarger, 2009

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7T886_CAPTE	R7TDM4_CAPTE	R7T886	R7TDM4	Uncharacterized protein.	Uncharacterized protein.	0.552
R7T886_CAPTE	R7TGI9_CAPTE	R7T886	R7TGI9	Uncharacterized protein.	Uncharacterized protein.	0.552
R7T886_CAPTE	R7UYH4_CAPTE	R7T886	R7UYH4	Uncharacterized protein.	Uncharacterized protein.	0.507
R7T886_CAPTE	R7V544_CAPTE	R7T886	R7V544	Uncharacterized protein.	Uncharacterized protein.	0.545
R7T8B9_CAPTE	R7URW9_CAPTE	R7T8B9	R7URW9	Uncharacterized protein.	Uncharacterized protein.	0.496
R7TDM4_CAPTE	R7T886_CAPTE	R7TDM4	R7T886	Uncharacterized protein.	Uncharacterized protein.	0.552
R7TDM4_CAPTE	R7U6D4_CAPTE	R7TDM4	R7U6D4	Uncharacterized protein.	PIP49_C domain-containing protein.	0.491
R7TDM4_CAPTE	R7UQC9_CAPTE	R7TDM4	R7UQC9	Uncharacterized protein.	Uncharacterized protein.	0.550
R7TDM4_CAPTE	R7URW9_CAPTE	R7TDM4	R7URW9	Uncharacterized protein.	Uncharacterized protein.	0.410
R7TDM4_CAPTE	R7UYH4_CAPTE	R7TDM4	R7UYH4	Uncharacterized protein.	Uncharacterized protein.	0.452
R7TGI9_CAPTE	R7T886_CAPTE	R7TGI9	R7T886	Uncharacterized protein.	Uncharacterized protein.	0.552
R7TGI9_CAPTE	R7U6D4_CAPTE	R7TGI9	R7U6D4	Uncharacterized protein.	PIP49_C domain-containing protein.	0.491
R7TGI9_CAPTE	R7UQC9_CAPTE	R7TGI9	R7UQC9	Uncharacterized protein.	Uncharacterized protein.	0.552
R7TGI9_CAPTE	R7URW9_CAPTE	R7TGI9	R7URW9	Uncharacterized protein.	Uncharacterized protein.	0.439
R7TGI9_CAPTE	R7UYH4_CAPTE	R7TGI9	R7UYH4	Uncharacterized protein.	Uncharacterized protein.	0.441
R7U6D4_CAPTE	R7TDM4_CAPTE	R7U6D4	R7TDM4	PIP49_C domain-containing protein.	Uncharacterized protein.	0.491
R7U6D4_CAPTE	R7TGI9_CAPTE	R7U6D4	R7TGI9	PIP49_C domain-containing protein.	Uncharacterized protein.	0.491
R7U6D4_CAPTE	R7V544_CAPTE	R7U6D4	R7V544	PIP49_C domain-containing protein.	Uncharacterized protein.	0.491
R7UQC9_CAPTE	R7TDM4_CAPTE	R7UQC9	R7TDM4	Uncharacterized protein.	Uncharacterized protein.	0.550
R7UQC9_CAPTE	R7TGI9_CAPTE	R7UQC9	R7TGI9	Uncharacterized protein.	Uncharacterized protein.	0.552

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