(54 nodes) Response to ionizing radiation network (Capitella teleta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7TPK5_CAPTE	Uncharacterized protein. (201 aa)
	R7UHF8_CAPTE	Uncharacterized protein. (229 aa)
	R7UGZ5_CAPTE	Uncharacterized protein. (840 aa)
	R7UG26_CAPTE	Uncharacterized protein. (181 aa)
	R7UEN0_CAPTE	Uncharacterized protein. (1407 aa)
	R7UE54_CAPTE	Uncharacterized protein. (140 aa)
	R7UDJ5_CAPTE	RING-type domain-containing protein. (429 aa)
	R7U8M5_CAPTE	Uncharacterized protein. (215 aa)
	R7U7E9_CAPTE	Uncharacterized protein. (739 aa)
	R7U6V1_CAPTE	MPN domain-containing protein. (275 aa)
	R7U4A7_CAPTE	DUF4502 domain-containing protein. (505 aa)
	R7TZE7_CAPTE	F-box domain-containing protein. (313 aa)
	R7TVY8_CAPTE	ABC transporter domain-containing protein. (614 aa)
	R7TVG6_CAPTE	Uncharacterized protein. (752 aa)
	R7TUT2_CAPTE	Uncharacterized protein. (52 aa)
	R7TU11_CAPTE	Uncharacterized protein. (462 aa)
	R7TPW9_CAPTE	Uncharacterized protein. (91 aa)
	R7TDX8_CAPTE	Cell cycle checkpoint control protein; Belongs to the rad9 family. (411 aa)
	R7TCX7_CAPTE	ABC transporter domain-containing protein. (675 aa)
	R7TAA2_CAPTE	BHLH domain-containing protein. (429 aa)
	R7T9A8_CAPTE	Uncharacterized protein. (1445 aa)
	R7T5F2_CAPTE	RECA_2 domain-containing protein. (274 aa)
	R7T3J9_CAPTE	Uncharacterized protein. (62 aa)
	R7VMB1_CAPTE	RECA_2 domain-containing protein. (146 aa)
	R7VJQ4_CAPTE	RECA_2 domain-containing protein. (138 aa)
	R7VJ97_CAPTE	RING-type domain-containing protein. (573 aa)
	R7VIM2_CAPTE	Uncharacterized protein. (537 aa)
	R7VHF1_CAPTE	Uncharacterized protein. (139 aa)
	R7VGU1_CAPTE	Uncharacterized protein. (1958 aa)
	R7VCC8_CAPTE	Uncharacterized protein. (261 aa)
	R7VC05_CAPTE	Uncharacterized protein. (1262 aa)
	R7V964_CAPTE	Uncharacterized protein. (382 aa)
	R7V8Y8_CAPTE	Ku_N domain-containing protein. (118 aa)
	R7V8E5_CAPTE	Uncharacterized protein. (822 aa)
	R7V7M3_CAPTE	Uncharacterized protein. (744 aa)
	R7V756_CAPTE	RAD51_interact domain-containing protein. (384 aa)
	R7V5J4_CAPTE	Uncharacterized protein. (862 aa)
	R7V3E3_CAPTE	Uncharacterized protein. (239 aa)
	R7V2Y0_CAPTE	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (747 aa)
	R7V2P7_CAPTE	Uncharacterized protein. (341 aa)
	R7V0Z7_CAPTE	Ku domain-containing protein. (553 aa)
	R7V070_CAPTE	RING-type domain-containing protein. (263 aa)
	R7UXS7_CAPTE	WD_REPEATS_REGION domain-containing protein. (160 aa)
	R7UWR4_CAPTE	RING-type domain-containing protein. (103 aa)
	R7UVV7_CAPTE	DNA ligase. (905 aa)
	R7US68_CAPTE	Uncharacterized protein. (162 aa)
	R7US52_CAPTE	Uncharacterized protein. (1449 aa)
	R7URN6_CAPTE	ABC transporter domain-containing protein. (559 aa)
	R7UR47_CAPTE	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (818 aa)
	R7UQ52_CAPTE	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase. (723 aa)
	R7UK11_CAPTE	WD_REPEATS_REGION domain-containing protein. (402 aa)
	R7UJL8_CAPTE	Uncharacterized protein. (421 aa)
	R7UI37_CAPTE	Uncharacterized protein. (777 aa)
	R7UHQ2_CAPTE	Uncharacterized protein. (322 aa)

Your Current Organism:

Capitella teleta

NCBI taxonomy Id: 283909
Other names: C. teleta, Capitella sp. I, Capitella sp. I AF-2005, Capitella sp. I ECS-2004, Capitella sp. I ES-2005, Capitella sp. MKJ-2016, Capitella teleta Blake, Grassle & Eckelbarger, 2009

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7T3J9_CAPTE	R7U6V1_CAPTE	R7T3J9	R7U6V1	Uncharacterized protein.	MPN domain-containing protein.	0.748
R7T3J9_CAPTE	R7US52_CAPTE	R7T3J9	R7US52	Uncharacterized protein.	Uncharacterized protein.	0.419
R7T5F2_CAPTE	R7UGZ5_CAPTE	R7T5F2	R7UGZ5	RECA_2 domain-containing protein.	Uncharacterized protein.	0.566
R7T5F2_CAPTE	R7UQ52_CAPTE	R7T5F2	R7UQ52	RECA_2 domain-containing protein.	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.	0.512
R7T5F2_CAPTE	R7UR47_CAPTE	R7T5F2	R7UR47	RECA_2 domain-containing protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.986
R7T5F2_CAPTE	R7UVV7_CAPTE	R7T5F2	R7UVV7	RECA_2 domain-containing protein.	DNA ligase.	0.414
R7T5F2_CAPTE	R7UWR4_CAPTE	R7T5F2	R7UWR4	RECA_2 domain-containing protein.	RING-type domain-containing protein.	0.812
R7T5F2_CAPTE	R7V2Y0_CAPTE	R7T5F2	R7V2Y0	RECA_2 domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.721
R7T5F2_CAPTE	R7V756_CAPTE	R7T5F2	R7V756	RECA_2 domain-containing protein.	RAD51_interact domain-containing protein.	0.734
R7T5F2_CAPTE	R7VC05_CAPTE	R7T5F2	R7VC05	RECA_2 domain-containing protein.	Uncharacterized protein.	0.721
R7T5F2_CAPTE	R7VCC8_CAPTE	R7T5F2	R7VCC8	RECA_2 domain-containing protein.	Uncharacterized protein.	0.485
R7T5F2_CAPTE	R7VJQ4_CAPTE	R7T5F2	R7VJQ4	RECA_2 domain-containing protein.	RECA_2 domain-containing protein.	0.937
R7T5F2_CAPTE	R7VMB1_CAPTE	R7T5F2	R7VMB1	RECA_2 domain-containing protein.	RECA_2 domain-containing protein.	0.937
R7T9A8_CAPTE	R7TDX8_CAPTE	R7T9A8	R7TDX8	Uncharacterized protein.	Cell cycle checkpoint control protein; Belongs to the rad9 family.	0.983
R7T9A8_CAPTE	R7UGZ5_CAPTE	R7T9A8	R7UGZ5	Uncharacterized protein.	Uncharacterized protein.	0.554
R7T9A8_CAPTE	R7UR47_CAPTE	R7T9A8	R7UR47	Uncharacterized protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.874
R7T9A8_CAPTE	R7US52_CAPTE	R7T9A8	R7US52	Uncharacterized protein.	Uncharacterized protein.	0.924
R7T9A8_CAPTE	R7UWR4_CAPTE	R7T9A8	R7UWR4	Uncharacterized protein.	RING-type domain-containing protein.	0.988
R7T9A8_CAPTE	R7V2Y0_CAPTE	R7T9A8	R7V2Y0	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.860
R7T9A8_CAPTE	R7VC05_CAPTE	R7T9A8	R7VC05	Uncharacterized protein.	Uncharacterized protein.	0.860

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