(7 nodes) U6 snRNA binding network (Capitella teleta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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protein homology

Your Input:
	R7T7V2_CAPTE	Uncharacterized protein. (841 aa)
	R7TEG0_CAPTE	WD_REPEATS_REGION domain-containing protein. (336 aa)
	R7TVT0_CAPTE	Uncharacterized protein. (416 aa)
	R7U1F6_CAPTE	Uncharacterized protein. (462 aa)
	R7U6L0_CAPTE	MPN domain-containing protein. (2345 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (136 aa)
	R7VDE1_CAPTE	WD_REPEATS_REGION domain-containing protein. (410 aa)

Your Current Organism:

Capitella teleta

NCBI taxonomy Id: 283909
Other names: C. teleta, Capitella sp. I, Capitella sp. I AF-2005, Capitella sp. I ECS-2004, Capitella sp. I ES-2005, Capitella sp. MKJ-2016, Capitella teleta Blake, Grassle & Eckelbarger, 2009

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM4	R7T7V2_CAPTE	R7UNN3	R7T7V2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.956
LSM4	R7TEG0_CAPTE	R7UNN3	R7TEG0	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	WD_REPEATS_REGION domain-containing protein.	0.960
LSM4	R7TVT0_CAPTE	R7UNN3	R7TVT0	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.755
LSM4	R7U1F6_CAPTE	R7UNN3	R7U1F6	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.956
LSM4	R7U6L0_CAPTE	R7UNN3	R7U6L0	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	MPN domain-containing protein.	0.982
LSM4	R7VDE1_CAPTE	R7UNN3	R7VDE1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	WD_REPEATS_REGION domain-containing protein.	0.960
R7T7V2_CAPTE	LSM4	R7T7V2	R7UNN3	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.956
R7T7V2_CAPTE	R7TEG0_CAPTE	R7T7V2	R7TEG0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.720
R7T7V2_CAPTE	R7U6L0_CAPTE	R7T7V2	R7U6L0	Uncharacterized protein.	MPN domain-containing protein.	0.413
R7T7V2_CAPTE	R7VDE1_CAPTE	R7T7V2	R7VDE1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.720
R7TEG0_CAPTE	LSM4	R7TEG0	R7UNN3	WD_REPEATS_REGION domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.960
R7TEG0_CAPTE	R7T7V2_CAPTE	R7TEG0	R7T7V2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.720
R7TEG0_CAPTE	R7U1F6_CAPTE	R7TEG0	R7U1F6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.720
R7TEG0_CAPTE	R7U6L0_CAPTE	R7TEG0	R7U6L0	WD_REPEATS_REGION domain-containing protein.	MPN domain-containing protein.	0.981
R7TVT0_CAPTE	LSM4	R7TVT0	R7UNN3	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.755
R7TVT0_CAPTE	R7U6L0_CAPTE	R7TVT0	R7U6L0	Uncharacterized protein.	MPN domain-containing protein.	0.976
R7U1F6_CAPTE	LSM4	R7U1F6	R7UNN3	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.956
R7U1F6_CAPTE	R7TEG0_CAPTE	R7U1F6	R7TEG0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.720
R7U1F6_CAPTE	R7U6L0_CAPTE	R7U1F6	R7U6L0	Uncharacterized protein.	MPN domain-containing protein.	0.413
R7U1F6_CAPTE	R7VDE1_CAPTE	R7U1F6	R7VDE1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.720

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