(15 nodes) Stem cell population maintenance network (Capitella teleta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (136 aa)
	R7T4X2_CAPTE	PCM1_C domain-containing protein. (1945 aa)
	R7T989_CAPTE	Homeobox domain-containing protein. (63 aa)
	R7TFW5_CAPTE	Uncharacterized protein. (416 aa)
	R7U053_CAPTE	Plus3 domain-containing protein. (694 aa)
	R7U7V4_CAPTE	Uncharacterized protein; Belongs to the MT-A70-like family. (337 aa)
	R7UBY1_CAPTE	YL1_C domain-containing protein. (378 aa)
	R7UGZ5_CAPTE	Uncharacterized protein. (840 aa)
	R7UNT9_CAPTE	Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (386 aa)
	R7UT86_CAPTE	Uncharacterized protein. (631 aa)
	R7UTQ4_CAPTE	Uncharacterized protein. (829 aa)
	R7UUD7_CAPTE	Uncharacterized protein. (233 aa)
	R7UV15_CAPTE	Uncharacterized protein. (350 aa)
	R7UVS4_CAPTE	Uncharacterized protein. (91 aa)
	R7VIA0_CAPTE	Uncharacterized protein. (241 aa)

Your Current Organism:

Capitella teleta

NCBI taxonomy Id: 283909
Other names: C. teleta, Capitella sp. I, Capitella sp. I AF-2005, Capitella sp. I ECS-2004, Capitella sp. I ES-2005, Capitella sp. MKJ-2016, Capitella teleta Blake, Grassle & Eckelbarger, 2009

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	R7U053_CAPTE	R7T407	R7U053	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Plus3 domain-containing protein.	0.512
R7U053_CAPTE	LSM1	R7U053	R7T407	Plus3 domain-containing protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.512
R7U053_CAPTE	R7UT86_CAPTE	R7U053	R7UT86	Plus3 domain-containing protein.	Uncharacterized protein.	0.999
R7UBY1_CAPTE	R7UT86_CAPTE	R7UBY1	R7UT86	YL1_C domain-containing protein.	Uncharacterized protein.	0.610
R7UGZ5_CAPTE	R7UTQ4_CAPTE	R7UGZ5	R7UTQ4	Uncharacterized protein.	Uncharacterized protein.	0.647
R7UT86_CAPTE	R7U053_CAPTE	R7UT86	R7U053	Uncharacterized protein.	Plus3 domain-containing protein.	0.999
R7UT86_CAPTE	R7UBY1_CAPTE	R7UT86	R7UBY1	Uncharacterized protein.	YL1_C domain-containing protein.	0.610
R7UTQ4_CAPTE	R7UGZ5_CAPTE	R7UTQ4	R7UGZ5	Uncharacterized protein.	Uncharacterized protein.	0.647
R7UTQ4_CAPTE	R7VIA0_CAPTE	R7UTQ4	R7VIA0	Uncharacterized protein.	Uncharacterized protein.	0.510
R7VIA0_CAPTE	R7UTQ4_CAPTE	R7VIA0	R7UTQ4	Uncharacterized protein.	Uncharacterized protein.	0.510

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